4XL1 image
Deposition Date 2015-01-13
Release Date 2015-03-04
Last Version Date 2025-04-02
Entry Detail
PDB ID:
4XL1
Keywords:
Title:
Complex of Notch1 (EGF11-13) bound to Delta-like 4 (N-EGF1)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Neurogenic locus notch homolog protein 1
Gene (Uniprot):Notch1
Chain IDs:A, C (auth: D)
Chain Length:118
Number of Molecules:2
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:Delta-like protein
Gene (Uniprot):Dll4
Mutations:G28S, F107L, L206P
Chain IDs:B, D (auth: E)
Chain Length:230
Number of Molecules:2
Biological Source:Rattus norvegicus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLY B LYS modified residue
Primary Citation
Structural biology. Structural basis for Notch1 engagement of Delta-like 4.
Science 347 847 853 (2015)
PMID: 25700513 DOI: 10.1126/science.1261093

Abstact

Notch receptors guide mammalian cell fate decisions by engaging the proteins Jagged and Delta-like (DLL). The 2.3 angstrom resolution crystal structure of the interacting regions of the Notch1-DLL4 complex reveals a two-site, antiparallel binding orientation assisted by Notch1 O-linked glycosylation. Notch1 epidermal growth factor-like repeats 11 and 12 interact with the DLL4 Delta/Serrate/Lag-2 (DSL) domain and module at the N-terminus of Notch ligands (MNNL) domains, respectively. Threonine and serine residues on Notch1 are functionalized with O-fucose and O-glucose, which act as surrogate amino acids by making specific, and essential, contacts to residues on DLL4. The elucidation of a direct chemical role for O-glycans in Notch1 ligand engagement demonstrates how, by relying on posttranslational modifications of their ligand binding sites, Notch proteins have linked their functional capacity to developmentally regulated biosynthetic pathways.

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Primary Citation of related structures