4XHC image
Deposition Date 2015-01-05
Release Date 2015-04-15
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4XHC
Keywords:
Title:
rhamnosidase from Klebsiella oxytoca with rhamnose bound
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-L-rhamnosidase
Chain IDs:A, B
Chain Length:543
Number of Molecules:2
Biological Source:Klebsiella oxytoca
Primary Citation
Crystal structure of a novel two domain GH78 family alpha-rhamnosidase from Klebsiella oxytoca with rhamnose bound.
Proteins 83 1742 1749 (2015)
PMID: 25846411 DOI: 10.1002/prot.24807

Abstact

The crystal structure of the GH78 family α-rhamnosidase from Klebsiella oxytoca (KoRha) has been determined at 2.7 Å resolution with rhamnose bound in the active site of the catalytic domain. Curiously, the putative catalytic acid, Asp 222, is preceded by an unusual non-proline cis-peptide bond which helps to project the carboxyl group into the active centre. This KoRha homodimeric structure is significantly smaller than those of the other previously determined GH78 structures. Nevertheless, the enzyme displays α-rhamnosidase activity when assayed in vitro, suggesting that the additional structural domains found in the related enzymes are dispensible for function.

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Primary Citation of related structures
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