4XGC image
Deposition Date 2014-12-30
Release Date 2015-04-01
Last Version Date 2024-11-06
Entry Detail
PDB ID:
4XGC
Title:
Crystal structure of the eukaryotic origin recognition complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 1
Gene (Uniprot):Orc1
Chain IDs:D (auth: A)
Chain Length:393
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 2
Gene (Uniprot):Orc2
Chain IDs:A (auth: B)
Chain Length:354
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 3
Gene (Uniprot):Orc3
Chain IDs:B (auth: C)
Chain Length:676
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 4
Gene (Uniprot):Orc4
Chain IDs:G (auth: D)
Chain Length:459
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 5
Gene (Uniprot):Orc5
Chain IDs:C (auth: E)
Chain Length:460
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 6
Gene (Uniprot):Orc6
Chain IDs:F
Chain Length:72
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 2
Chain IDs:E (auth: G)
Chain Length:41
Number of Molecules:1
Biological Source:Drosophila melanogaster
Primary Citation
Crystal structure of the eukaryotic origin recognition complex.
Nature 519 321 326 (2015)
PMID: 25762138 DOI: 10.1038/nature14239

Abstact

Initiation of cellular DNA replication is tightly controlled to sustain genomic integrity. In eukaryotes, the heterohexameric origin recognition complex (ORC) is essential for coordinating replication onset. Here we describe the crystal structure of Drosophila ORC at 3.5 Å resolution, showing that the 270 kilodalton initiator core complex comprises a two-layered notched ring in which a collar of winged-helix domains from the Orc1-5 subunits sits atop a layer of AAA+ (ATPases associated with a variety of cellular activities) folds. Although canonical inter-AAA+ domain interactions exist between four of the six ORC subunits, unanticipated features are also evident. These include highly interdigitated domain-swapping interactions between the winged-helix folds and AAA+ modules of neighbouring protomers, and a quasi-spiral arrangement of DNA binding elements that circumnavigate an approximately 20 Å wide channel in the centre of the complex. Comparative analyses indicate that ORC encircles DNA, using its winged-helix domain face to engage the mini-chromosome maintenance 2-7 (MCM2-7) complex during replicative helicase loading; however, an observed out-of-plane rotation of more than 90° for the Orc1 AAA+ domain disrupts interactions with catalytic amino acids in Orc4, narrowing and sealing off entry into the central channel. Prima facie, our data indicate that Drosophila ORC can switch between active and autoinhibited conformations, suggesting a novel means for cell cycle and/or developmental control of ORC functions.

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