4XD9 image
Deposition Date 2014-12-19
Release Date 2015-06-10
Last Version Date 2024-03-20
Entry Detail
PDB ID:
4XD9
Keywords:
Title:
Structure of Rpf2-Rrs1 complex involved in ribosome biogenesis
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribosome biogenesis protein, putative (AFU_orthologue AFUA_8G04790)
Gene (Uniprot):ANIA_10200
Chain IDs:A, C
Chain Length:323
Number of Molecules:2
Biological Source:Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Polymer Type:polypeptide(L)
Molecule:Ribosome biogenesis protein (Rrs1), putative (AFU_orthologue AFUA_7G04430)
Gene (Uniprot):ANIA_03745
Chain IDs:B, D
Chain Length:221
Number of Molecules:2
Biological Source:Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
Primary Citation
Structural and functional analysis of the Rpf2-Rrs1 complex in ribosome biogenesis.
Nucleic Acids Res. 43 4746 4757 (2015)
PMID: 25855814 DOI: 10.1093/nar/gkv305

Abstact

Proteins Rpf2 and Rrs1 are required for 60S ribosomal subunit maturation. These proteins are necessary for the recruitment of three ribosomal components (5S ribosomal RNA [rRNA], RpL5 and RpL11) to the 90S ribosome precursor and subsequent 27SB pre-rRNA processing. Here we present the crystal structure of the Aspergillus nidulans (An) Rpf2-Rrs1 core complex. The core complex contains the tightly interlocked N-terminal domains of Rpf2 and Rrs1. The Rpf2 N-terminal domain includes a Brix domain characterized by similar N- and C-terminal architecture. The long α-helix of Rrs1 joins the C-terminal half of the Brix domain as if it were part of a single molecule. The conserved proline-rich linker connecting the N- and C-terminal domains of Rrs1 wrap around the side of Rpf2 and anchor the C-terminal domain of Rrs1 to a specific site on Rpf2. In addition, gel shift analysis revealed that the Rpf2-Rrs1 complex binds directly to 5S rRNA. Further analysis of Rpf2-Rrs1 mutants demonstrated that Saccharomyces cerevisiae Rpf2 R236 (corresponds to R238 of AnRpf2) plays a significant role in this binding. Based on these studies and previous reports, we have proposed a model for ribosomal component recruitment to the 90S ribosome precursor.

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