4XB2 image
Deposition Date 2014-12-16
Release Date 2015-07-15
Last Version Date 2023-11-15
Entry Detail
PDB ID:
4XB2
Keywords:
Title:
Hyperthermophilic archaeal homoserine dehydrogenase mutant in complex with NADPH
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.43 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:319aa long hypothetical homoserine dehydrogenase
Gene (Uniprot):PH1075
Mutagens:K57A
Chain IDs:A, B
Chain Length:335
Number of Molecules:2
Biological Source:Pyrococcus horikoshii OT3
Primary Citation
Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases.
Sci Rep 5 11674 11674 (2015)
PMID: 26154028 DOI: 10.1038/srep11674

Abstact

NAD(P)-dependent dehydrogenases differ according to their coenzyme preference: some prefer NAD, others NADP, and still others exhibit dual cofactor specificity. The structure of a newly identified archaeal homoserine dehydrogenase showed this enzyme to have a strong preference for NADP. However, NADP did not act as a cofactor with this enzyme, but as a strong inhibitor of NAD-dependent homoserine oxidation. Structural analysis and site-directed mutagenesis showed that the large number of interactions between the cofactor and the enzyme are responsible for the lack of reactivity of the enzyme towards NADP. This observation suggests this enzyme exhibits a new variation on cofactor binding to a dehydrogenase: very strong NADP binding that acts as an obstacle to NAD(P)-dependent dehydrogenase catalytic activity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures