4X8I image
Entry Detail
PDB ID:
4X8I
Keywords:
Title:
de novo crystal structure of the Pyrococcus Furiosus TET3 aminopeptidase
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2014-12-10
Release Date:
2016-02-10
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
I 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lysyl aminopeptidase
Chain IDs:A, B, C
Chain Length:346
Number of Molecules:3
Biological Source:Pyrococcus furiosus
Primary Citation
Tuned by metals: the TET peptidase activity is controlled by 3 metal binding sites.
Sci Rep 6 20876 20876 (2016)
PMID: 26853450 DOI: 10.1038/srep20876

Abstact

TET aminopeptidases are dodecameric particles shared in the three life domains involved in various biological processes, from carbon source provider in archaea to eye-pressure regulation in humans. Each subunit contains a dinuclear metal site (M1 and M2) responsible for the enzyme catalytic activity. However, the role of each metal ion is still uncharacterized. Noteworthy, while mesophilic TETs are activated by Mn(2+), hyperthermophilic TETs prefers Co(2+). Here, by means of anomalous x-ray crystallography and enzyme kinetics measurements of the TET3 aminopeptidase from the hyperthermophilic organism Pyrococcus furiosus (PfTET3), we show that M2 hosts the catalytic activity of the enzyme, while M1 stabilizes the TET3 quaternary structure and controls the active site flexibility in a temperature dependent manner. A new third metal site (M3) was found in the substrate binding pocket, modulating the PfTET3 substrate preferences. These data show that TET activity is tuned by the molecular interplay among three metal sites.

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