4X82 image
Deposition Date 2014-12-09
Release Date 2016-06-15
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4X82
Title:
Crystal Structure of the Extracellular Domain of ZIP4
Biological Source:
Source Organism:
Pteropus alecto (Taxon ID: 9402)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.76 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Zinc transporter ZIP4
Gene (Uniprot):SLC39A4
Chain IDs:A (auth: B), B (auth: A)
Chain Length:287
Number of Molecules:2
Biological Source:Pteropus alecto
Ligand Molecules
Primary Citation
Structural insights of ZIP4 extracellular domain critical for optimal zinc transport.
Nat Commun 7 11979 11979 (2016)
PMID: 27321477 DOI: 10.1038/ncomms11979

Abstact

The ZIP zinc transporter family is responsible for zinc uptake from the extracellular milieu or intracellular vesicles. The LIV-1 subfamily, containing nine out of the 14 human ZIP proteins, is featured with a large extracellular domain (ECD). The critical role of the ECD is manifested by disease-causing mutations on ZIP4, a representative LIV-1 protein. Here we report the first crystal structure of a mammalian ZIP4-ECD, which reveals two structurally independent subdomains and an unprecedented dimer centred at the signature PAL motif. Structure-guided mutagenesis, cell-based zinc uptake assays and mapping of the disease-causing mutations indicate that the two subdomains play pivotal but distinct roles and that the bridging region connecting them is particularly important for ZIP4 function. These findings lead to working hypotheses on how ZIP4-ECD exerts critical functions in zinc transport. The conserved dimeric architecture in ZIP4-ECD is also demonstrated to be a common structural feature among the LIV-1 proteins.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback