4X6X image
Deposition Date 2014-12-09
Release Date 2015-04-08
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4X6X
Title:
Human soluble epoxide hydrolase in complex with a three substituted cyclopropane derivative
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Bifunctional epoxide hydrolase 2
Gene (Uniprot):EPHX2
Chain IDs:A, B
Chain Length:336
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Three-dimensional rational approach to the discovery of potent substituted cyclopropyl urea soluble epoxide hydrolase inhibitors.
Bioorg.Med.Chem.Lett. 25 1705 1708 (2015)
PMID: 25800114 DOI: 10.1016/j.bmcl.2015.02.076

Abstact

We have previously reported a series of cyclopropyl urea derivatives as potent orally available soluble epoxide hydrolase (sEH) inhibitors. Here, we designed and synthesized three substituted cyclopropane derivatives that occupy all available pockets of sEH catalytic domain. Compound 14 with a diphenyl substituted cyclopropyl moiety showed good sEH inhibitory activity. Co-crystal structure of this compound and human sEH hydrolase catalytic domain revealed enzyme pockets occupied by the phenoxypiperidine part and the diphenyl cyclopropyl moiety. Furthermore, investigation of the phenoxypiperidine part of compound 14 resulted in the discovery of compound 19, which showed potent sEH inhibitory activity (sub-nM sEH IC50 values).

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Primary Citation of related structures