4X36 image
Entry Detail
PDB ID:
4X36
Keywords:
Title:
Crystal structure of the autolysin LytA from Streptococcus pneumoniae TIGR4
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2014-11-28
Release Date:
2015-05-27
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.19
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Autolysin
Chain IDs:A
Chain Length:318
Number of Molecules:1
Biological Source:Streptococcus pneumoniae TIGR4
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A ? modified residue
Primary Citation
Full-length structure of the major autolysin LytA.
Acta Crystallogr.,Sect.D 71 1373 1381 (2015)
PMID: 26057677 DOI: 10.1107/S1399004715007403

Abstact

LytA is responsible for the autolysis of many Streptococcus species, including pathogens such as S. pneumoniae, S. pseudopneumoniae and S. mitis. However, how this major autolysin achieves full activity remains unknown. Here, the full-length structure of the S. pneumoniae LytA dimer is reported at 2.1 Å resolution. Each subunit has an N-terminal amidase domain and a C-terminal choline-binding domain consisting of six choline-binding repeats, which form five canonical and one single-layered choline-binding sites. Site-directed mutageneses combined with enzymatic activity assays indicate that dimerization and binding to choline are two independent requirements for the autolytic activity of LytA in vivo. Altogether, it is suggested that dimerization and full occupancy of all choline-binding sites through binding to choline-containing TA chains enable LytA to adopt a fully active conformation which allows the amidase domain to cleave two lactyl-amide bonds located about 103 Å apart on the peptidoglycan.

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