4X34 image
Deposition Date 2014-11-27
Release Date 2015-03-04
Last Version Date 2023-11-15
Entry Detail
PDB ID:
4X34
Title:
Crystal structure of the 53BP1 tandem tudor domain in complex with p53K381acK382me2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tumor suppressor p53-binding protein 1
Gene (Uniprot):TP53BP1
Chain IDs:A, B
Chain Length:120
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:THR-SER-ARG-HIS-ALY-MLY-LEU-MET-PHE-LYS
Chain IDs:C, D
Chain Length:10
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
An Acetyl-Methyl Switch Drives a Conformational Change in p53.
Structure 23 322 331 (2015)
PMID: 25651062 DOI: 10.1016/j.str.2014.12.010

Abstact

Individual posttranslational modifications (PTMs) of p53 mediate diverse p53-dependent responses; however, much less is known about the combinatorial action of adjacent modifications. Here, we describe crosstalk between the early DNA damage response mark p53K382me2 and the surrounding PTMs that modulate binding of p53 cofactors, including 53BP1 and p300. The 1.8 Å resolution crystal structure of the tandem Tudor domain (TTD) of 53BP1 in complex with p53 peptide acetylated at K381 and dimethylated at K382 (p53K381acK382me2) reveals that the dual PTM induces a conformational change in p53. The α-helical fold of p53K381acK382me2 positions the side chains of R379, K381ac, and K382me2 to interact with TTD concurrently, reinforcing a modular design of double PTM mimetics. Biochemical and nuclear magnetic resonance analyses show that other surrounding PTMs, including phosphorylation of serine/threonine residues of p53, affect association with TTD. Our findings suggest a novel PTM-driven conformation switch-like mechanism that may regulate p53 interactions with binding partners.

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