4X1I image
Entry Detail
PDB ID:
4X1I
Title:
Discovery of cytotoxic Dolastatin 10 analogs with N-terminal modifications
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-11-24
Release Date:
2015-03-25
Method Details:
Experimental Method:
Resolution:
3.11 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tubulin alpha chain
Chain IDs:A, C
Chain Length:451
Number of Molecules:2
Biological Source:Ovis aries
Polymer Type:polypeptide(L)
Description:Tubulin beta chain
Chain IDs:B, D
Chain Length:445
Number of Molecules:2
Biological Source:Ovis aries
Polymer Type:polypeptide(L)
Description:Stathmin-4
Chain IDs:E
Chain Length:142
Number of Molecules:1
Biological Source:Rattus norvegicus
Peptide-like Molecules
PRD_002148
Primary Citation
Discovery of cytotoxic dolastatin 10 analogues with N-terminal modifications.
J.Med.Chem. 57 10527 10543 (2014)
PMID: 25431858 DOI: 10.1021/jm501649k

Abstact

Auristatins, synthetic analogues of the antineoplastic natural product Dolastatin 10, are ultrapotent cytotoxic microtubule inhibitors that are clinically used as payloads in antibody-drug conjugates (ADCs). The design and synthesis of several new auristatin analogues with N-terminal modifications that include amino acids with α,α-disubstituted carbon atoms are described, including the discovery of our lead auristatin, PF-06380101. This modification of the peptide structure is unprecedented and led to analogues with excellent potencies in tumor cell proliferation assays and differential ADME properties when compared to other synthetic auristatin analogues that are used in the preparation of ADCs. In addition, auristatin cocrystal structures with tubulin are being presented that allow for the detailed examination of their binding modes. A surprising finding is that all analyzed analogues have a cis-configuration at the Val-Dil amide bond in their functionally relevant tubulin bound state, whereas in solution this bond is exclusively in the trans-configuration. This remarkable observation shines light onto the preferred binding mode of auristatins and serves as a valuable tool for structure-based drug design.

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