4X1H image
Deposition Date 2014-11-24
Release Date 2015-11-04
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4X1H
Title:
Opsin/G(alpha) peptide complex stabilized by nonyl-glucoside
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.22
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
H 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Rhodopsin
Gene (Uniprot):RHO
Chain IDs:A
Chain Length:348
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Molecule:C-terminal derived peptide of guanine nucleotide-binding protein G(t) subunit alpha-1
Chain IDs:B (auth: C)
Chain Length:11
Number of Molecules:1
Biological Source:Bos taurus
Primary Citation
The High-Resolution Structure of Activated Opsin Reveals a Conserved Solvent Network in the Transmembrane Region Essential for Activation.
Structure 23 2358 2364 (2015)
PMID: 26526852 DOI: 10.1016/j.str.2015.09.015

Abstact

Rhodopsin, a light-activated G protein coupled receptor (GPCR), has been the subject of numerous biochemical and structural investigations, serving as a model receptor for GPCRs and their activation. We present the 2.3-Å resolution structure of native source rhodopsin stabilized in a conformation competent for G protein binding. An extensive water-mediated hydrogen bond network linking the chromophore binding site to the site of G protein binding is observed, providing connections to conserved motifs essential for GPCR activation. Comparison of this extensive solvent-mediated hydrogen-bonding network with the positions of ordered solvent in earlier crystallographic structures of rhodopsin photointermediates reveals both static structural and dynamic functional water-protein interactions present during the activation process. When considered along with observations that solvent occupies similar positions in the structures of other GPCRs, these analyses strongly support an integral role for this dynamic ordered water network in both rhodopsin and GPCR activation.

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Primary Citation of related structures
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