ISDA

Deposition Date 2014-11-24

Release Date 2015-04-08

Last Version Date 2024-10-23

Entry Detail

PDB ID:

4X1D

Keywords:

METAL TRANSPORT

Title:

Ytterbium-bound human serum transferrin

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.80 Å

R-Value Free:

0.23

R-Value Work:

0.19

R-Value Observed:

0.19

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Serotransferrin
Gene (Uniprot):TF
Chain IDs:A, B
Chain Length:679
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P02787 Pfam ID:PF00405

Primary Citation

"Anion clamp" allows flexible protein to impose coordination geometry on metal ions

Wang, M, Lai, T.P, Wang, L, Zhang, H, Yang, N, Sadler, P.J, Sun, H.Show

Chem.Commun.(Camb.) 51 7867 7870 (2015)

PMID: 25854324 DOI: 10.1039/c4cc09642h

Abstact

X-ray crystal structures of human serum transferrin (77 kDa) with Yb(III) or Fe(III) bound to the C-lobe and malonate as the synergistic anion show that the large Yb(III) ion causes the expansion of the metal binding pocket while octahedral metal coordination geometry is preserved, an unusual geometry for a lanthanide ion.

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Primary Citation of related structures