4WZA image
Deposition Date 2014-11-19
Release Date 2014-12-31
Last Version Date 2023-09-27
Entry Detail
PDB ID:
4WZA
Keywords:
Title:
Asymmetric Nucleotide Binding in the Nitrogenase Complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nitrogenase molybdenum-iron protein alpha chain
Gene (Uniprot):nifD
Chain IDs:A, C
Chain Length:477
Number of Molecules:2
Biological Source:Azotobacter vinelandii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nitrogenase molybdenum-iron protein beta chain
Gene (Uniprot):nifK
Chain IDs:B, D
Chain Length:522
Number of Molecules:2
Biological Source:Azotobacter vinelandii
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nitrogenase iron protein 1
Gene (Uniprot):nifH1
Chain IDs:E, F, G, H
Chain Length:276
Number of Molecules:4
Biological Source:Azotobacter vinelandii
Primary Citation
Structural evidence for asymmetrical nucleotide interactions in nitrogenase.
J.Am.Chem.Soc. 137 146 149 (2015)
PMID: 25522159 DOI: 10.1021/ja511945e

Abstact

The roles of ATP hydrolysis in electron-transfer (ET) reactions of the nitrogenase catalytic cycle remain obscure. Here, we present a new structure of a nitrogenase complex crystallized with MgADP and MgAMPPCP, an ATP analogue. In this structure the two nucleotides are bound asymmetrically by the Fe-protein subunits connected to the two different MoFe-protein subunits. This binding mode suggests that ATP hydrolysis and phosphate release may proceed by a stepwise mechanism. Through the associated Fe-protein conformational changes, a stepwise mechanism is anticipated to prolong the lifetime of the Fe-protein-MoFe-protein complex and, in turn, could orchestrate the sequence of intracomplex ET required for substrate reduction.

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Primary Citation of related structures
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