4WZ3 image
Deposition Date 2014-11-18
Release Date 2015-01-07
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4WZ3
Keywords:
Title:
Crystal structure of the complex between LubX/LegU2/Lpp2887 U-box 1 and Homo sapiens UBE2D2
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 D2
Gene (Uniprot):UBE2D2
Mutations:C85S
Chain IDs:A
Chain Length:148
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase LubX
Gene (Uniprot):lubX
Chain IDs:B
Chain Length:215
Number of Molecules:1
Biological Source:Legionella pneumophila
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE B MET modified residue
Primary Citation
Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila.
Structure 23 1459 1469 (2015)
PMID: 26146184 DOI: 10.1016/j.str.2015.05.020

Abstact

LubX is part of the large arsenal of effectors in Legionella pneumophila that are translocated into the host cytosol during infection. Despite such unique features as the presence of two U-box motifs and its targeting of another effector SidH, the molecular basis of LubX activity remains poorly understood. Here we show that the N terminus of LubX is able to activate an extended number of ubiquitin-conjugating (E2) enzymes including UBE2W, UBEL6, and all tested members of UBE2D and UBE2E families. Crystal structures of LubX alone and in complex with UBE2D2 revealed drastic molecular diversification between the two U-box domains, with only the N-terminal U-box retaining E2 recognition features typical for its eukaryotic counterparts. Extensive mutagenesis followed by functional screening in a yeast model system captured functionally important LubX residues including Arg121, critical for interactions with SidH. Combined, these data provide a new molecular insight into the function of this unique pathogenic factor.

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Primary Citation of related structures