4WWB image
Deposition Date 2014-11-10
Release Date 2015-02-11
Last Version Date 2024-01-10
Entry Detail
PDB ID:
4WWB
Title:
High-resolution structure of the Ni-bound form of the Y135F mutant of C. metallidurans CnrXs
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.11 Å
R-Value Free:
0.12
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nickel and cobalt resistance protein CnrR
Gene (Uniprot):cnrR
Mutations:Y135F
Chain IDs:A
Chain Length:118
Number of Molecules:1
Biological Source:Ralstonia metallidurans
Primary Citation
Response of CnrX from Cupriavidus metallidurans CH34 to nickel binding.
Metallomics 7 622 631 (2015)
PMID: 25628016 DOI: 10.1039/c4mt00293h

Abstact

Resistance to high concentration of nickel ions is mediated in Cupriavidus metallidurans by the CnrCBA transenvelope efflux complex. Expression of the cnrCBA genes is regulated by the transmembrane signal transduction complex CnrYXH. Together, the metal sensor CnrX and the transmembrane antisigma factor CnrY control the availability of the extracytoplasmic function sigma factor CnrH. Release of CnrH from sequestration by CnrY at the cytoplasmic side of the membrane depends essentially on the binding of the agonist metal ion Ni(ii) to the periplasmic metal sensor domain of CnrX. CnrH availability leads to transcription initiation at the promoters cnrYp and cnrCp and to the expression of the genes in the cnrYXHCBA nickel resistance determinant. The first steps of signal propagation by CnrX rely on subtle metal-dependent allosteric modifications. To study the nickel-mediated triggering process by CnrX, we have altered selected residues, F66, M123, and Y135, and explored the physiological consequences of these changes with respect to metal resistance, expression of a cnrCBA-lacZ reporter fusion and protein production. M123C- and Y135F-CnrXs have been further characterized in vitro by metal affinity measurements and crystallographic structure analysis. Atomic-resolution structures of metal-bound M123C- and Y135F-CnrXs showed that Ni(ii) binds two of the three canonical conformations identified and that Ni(ii) sensing likely proceeds by conformation selection.

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