4WT5 image
Deposition Date 2014-10-29
Release Date 2015-07-22
Last Version Date 2024-01-10
Entry Detail
PDB ID:
4WT5
Keywords:
Title:
The C-terminal domain of Rubisco Accumulation Factor 1 from Arabidopsis thaliana, crystal form II
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.57 Å
R-Value Free:
0.27
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Rubisco Accumulation Factor 1, isoform 2
Gene (Uniprot):RAF1.2
Chain IDs:A, B
Chain Length:169
Number of Molecules:2
Biological Source:Arabidopsis thaliana
Primary Citation
Structure and mechanism of the Rubisco-assembly chaperone Raf1.
Nat.Struct.Mol.Biol. 22 720 728 (2015)
PMID: 26237510 DOI: 10.1038/nsmb.3062

Abstact

Biogenesis of the photosynthetic enzyme Rubisco, a complex of eight large (RbcL) and eight small (RbcS) subunits, requires assembly chaperones. Here we analyzed the role of Rubisco accumulation factor1 (Raf1), a dimer of ∼40-kDa subunits. We find that Raf1 from Synechococcus elongatus acts downstream of chaperonin-assisted RbcL folding by stabilizing RbcL antiparallel dimers for assembly into RbcL8 complexes with four Raf1 dimers bound. Raf1 displacement by RbcS results in holoenzyme formation. Crystal structures show that Raf1 from Arabidopsis thaliana consists of a β-sheet dimerization domain and a flexibly linked α-helical domain. Chemical cross-linking and EM reconstruction indicate that the β-domains bind along the equator of each RbcL2 unit, and the α-helical domains embrace the top and bottom edges of RbcL2. Raf1 fulfills a role similar to that of the assembly chaperone RbcX, thus suggesting that functionally redundant factors ensure efficient Rubisco biogenesis.

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Primary Citation of related structures