4WQF image
Entry Detail
PDB ID:
4WQF
Keywords:
Title:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state
Biological Source:
PDB Version:
Deposition Date:
2014-10-21
Release Date:
2015-01-28
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L27
Chain IDs:X (auth: A0), DC (auth: C0)
Chain Length:85
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L28
Chain IDs:Y (auth: A1), EC (auth: C1)
Chain Length:98
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L29
Chain IDs:Z (auth: A2), FC (auth: C2)
Chain Length:72
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L30
Chain IDs:AA (auth: A3), GC (auth: C3)
Chain Length:60
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L31
Chain IDs:BA (auth: A4), HC (auth: C4)
Chain Length:71
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L32
Chain IDs:CA (auth: A5), IC (auth: C5)
Chain Length:60
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L33
Chain IDs:DA (auth: A6), JC (auth: C6)
Chain Length:54
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L34
Chain IDs:EA (auth: A7), KC (auth: C7)
Chain Length:49
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L35
Chain IDs:FA (auth: A8), LC (auth: C8)
Chain Length:65
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L36
Chain IDs:GA (auth: A9), MC (auth: C9)
Chain Length:37
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polyribonucleotide
Description:23S Ribosomal RNA
Chain IDs:A (auth: AA), GB (auth: CA)
Chain Length:2915
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
Polymer Type:polyribonucleotide
Description:5S Ribosomal RNA
Chain IDs:B (auth: AB), HB (auth: CB)
Chain Length:121
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L1
Chain IDs:C (auth: AC), IB (auth: CC)
Chain Length:228
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L2
Chain IDs:D (auth: AD), JB (auth: CD)
Chain Length:276
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L3
Chain IDs:E (auth: AE), KB (auth: CE)
Chain Length:206
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L4
Chain IDs:F (auth: AF), LB (auth: CF)
Chain Length:210
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L5
Chain IDs:G (auth: AG), MB (auth: CG)
Chain Length:182
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L6
Chain IDs:H (auth: AH), NB (auth: CH)
Chain Length:180
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L10
Chain IDs:I (auth: AK), OB (auth: CK)
Chain Length:173
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L11
Chain IDs:J (auth: AL), PB (auth: CL)
Chain Length:147
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L13
Chain IDs:K (auth: AN), QB (auth: CN)
Chain Length:140
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L14
Chain IDs:L (auth: AO), RB (auth: CO)
Chain Length:122
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L15
Chain IDs:M (auth: AP), SB (auth: CP)
Chain Length:150
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L16
Chain IDs:N (auth: AQ), TB (auth: CQ)
Chain Length:141
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L17
Chain IDs:O (auth: AR), UB (auth: CR)
Chain Length:118
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L18
Chain IDs:P (auth: AS), VB (auth: CS)
Chain Length:112
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L19
Chain IDs:Q (auth: AT), WB (auth: CT)
Chain Length:146
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L20
Chain IDs:R (auth: AU), XB (auth: CU)
Chain Length:118
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L21
Chain IDs:S (auth: AV), YB (auth: CV)
Chain Length:101
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L22
Chain IDs:T (auth: AW), ZB (auth: CW)
Chain Length:113
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L23
Chain IDs:U (auth: AX), AC (auth: CX)
Chain Length:96
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L24
Chain IDs:V (auth: AY), BC (auth: CY)
Chain Length:110
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L25
Chain IDs:W (auth: AZ), CC (auth: CZ)
Chain Length:206
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polyribonucleotide
Description:16S Ribosomal RNA
Chain IDs:HA (auth: BA), NC (auth: DA)
Chain Length:1521
Number of Molecules:2
Biological Source:Thermus thermophilus HB8
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S2
Chain IDs:IA (auth: BB), OC (auth: DB)
Chain Length:256
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S3
Chain IDs:JA (auth: BC), PC (auth: DC)
Chain Length:239
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S4
Chain IDs:KA (auth: BD), QC (auth: DD)
Chain Length:209
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S5
Chain IDs:LA (auth: BE), RC (auth: DE)
Chain Length:162
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S6
Chain IDs:MA (auth: BF), SC (auth: DF)
Chain Length:101
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S7
Chain IDs:NA (auth: BG), TC (auth: DG)
Chain Length:156
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S8
Chain IDs:OA (auth: BH), UC (auth: DH)
Chain Length:138
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S9
Chain IDs:PA (auth: BI), VC (auth: DI)
Chain Length:128
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S10
Chain IDs:QA (auth: BJ), WC (auth: DJ)
Chain Length:105
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S11
Chain IDs:RA (auth: BK), XC (auth: DK)
Chain Length:129
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S12
Chain IDs:SA (auth: BL), YC (auth: DL)
Chain Length:132
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S13
Chain IDs:TA (auth: BM), ZC (auth: DM)
Chain Length:126
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S14 type Z
Chain IDs:UA (auth: BN), AD (auth: DN)
Chain Length:61
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S15
Chain IDs:VA (auth: BO), BD (auth: DO)
Chain Length:89
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S16
Chain IDs:WA (auth: BP), CD (auth: DP)
Chain Length:88
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S17
Chain IDs:XA (auth: BQ), DD (auth: DQ)
Chain Length:105
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S18
Chain IDs:YA (auth: BR), ED (auth: DR)
Chain Length:88
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S19
Chain IDs:ZA (auth: BS), FD (auth: DS)
Chain Length:93
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein S20
Chain IDs:AB (auth: BT), GD (auth: DT)
Chain Length:106
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polypeptide(L)
Description:30S ribosomal protein Thx
Chain IDs:BB (auth: BU), HD (auth: DU)
Chain Length:27
Number of Molecules:2
Biological Source:Thermus thermophilus
Polymer Type:polyribonucleotide
Description:mRNA
Chain IDs:CB (auth: BV), ID (auth: DV)
Chain Length:18
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polyribonucleotide
Description:P-site tRNA
Chain IDs:DB (auth: BW), EB (auth: BY), JD (auth: DW), KD (auth: DY)
Chain Length:76
Number of Molecules:4
Biological Source:Escherichia coli str. K-12 substr. MC4100
Polymer Type:polypeptide(L)
Description:50S ribosomal protein L9,Elongation factor G
Chain IDs:FB (auth: BZ), LD (auth: DZ)
Chain Length:758
Number of Molecules:2
Biological Source:Thermus thermophilus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
4SU DB U modified residue
5MU DB U modified residue
7MG DB G modified residue
MIA DB A modified residue
PSU DB U modified residue
Primary Citation
Conformational Changes of Elongation Factor G on the Ribosome during tRNA Translocation.
Cell 160 219 227 (2015)
PMID: 25594181 DOI: 10.1016/j.cell.2014.11.049

Abstact

The universally conserved GTPase elongation factor G (EF-G) catalyzes the translocation of tRNA and mRNA on the ribosome after peptide bond formation. Despite numerous studies suggesting that EF-G undergoes extensive conformational rearrangements during translocation, high-resolution structures exist for essentially only one conformation of EF-G in complex with the ribosome. Here, we report four atomic-resolution crystal structures of EF-G bound to the ribosome programmed in the pre- and posttranslocational states and to the ribosome trapped by the antibiotic dityromycin. We observe a previously unseen conformation of EF-G in the pretranslocation complex, which is independently captured by dityromycin on the ribosome. Our structures provide insights into the conformational space that EF-G samples on the ribosome and reveal that tRNA translocation on the ribosome is facilitated by a structural transition of EF-G from a compact to an elongated conformation, which can be prevented by the antibiotic dityromycin.

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Primary Citation of related structures