4WLK image
Entry Detail
PDB ID:
4WLK
Keywords:
Title:
Stationary Phase Survival Protein YuiC from B.subtilis complexed with reaction product
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2014-10-07
Release Date:
2015-07-08
Method Details:
Experimental Method:
Resolution:
2.03 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:YuiC
Chain IDs:A, B
Chain Length:166
Number of Molecules:2
Biological Source:Bacillus subtilis
Ligand Molecules
Primary Citation
Structure of the stationary phase survival protein YuiC from B.subtilis.
Bmc Struct.Biol. 15 12 12 (2015)
PMID: 26163297 DOI: 10.1186/s12900-015-0039-z

Abstact

BACKGROUND Stationary phase survival proteins (Sps) were found in Firmicutes as having analogous domain compositions, and in some cases genome context, as the resuscitation promoting factors of Actinobacteria, but with a different putative peptidoglycan cleaving domain. RESULTS The first structure of a Firmicute Sps protein YuiC from B. subtilis, is found to be a stripped down version of the cell-wall peptidoglycan hydrolase MltA. The YuiC structures are of a domain swapped dimer, although some monomer is also found in solution. The protein crystallised in the presence of pentasaccharide shows a 1,6-anhydrodisaccharide sugar product, indicating that YuiC cleaves the sugar backbone to form an anhydro product at least on lengthy incubation during crystallisation. CONCLUSIONS The structural simplification of MltA in Sps proteins is analogous to that of the resuscitation promoting factor domains of Actinobacteria, which are stripped down versions of lysozyme and soluble lytic transglycosylase proteins.

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Primary Citation of related structures