4WIP image
Deposition Date 2014-09-26
Release Date 2015-05-13
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4WIP
Title:
DIX domain of human Dvl2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.69 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Segment polarity protein dishevelled homolog DVL-2
Gene (Uniprot):DVL2
Mutations:Y27D
Chain IDs:A, B, C
Chain Length:97
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Ubiquitination of the Dishevelled DIX domain blocks its head-to-tail polymerization.
Nat Commun 6 6718 6718 (2015)
PMID: 25907794 DOI: 10.1038/ncomms7718

Abstact

Dishevelled relays Wnt signals from the plasma membrane to different cytoplasmic effectors. Its signalling activity depends on its DIX domain, which undergoes head-to-tail polymerization to assemble signalosomes. The DIX domain is ubiquitinated in vivo at multiple lysines, which can be antagonized by various deubiquitinases (DUBs) including the CYLD tumour suppressor that attenuates Wnt signalling. Here, we generate milligram quantities of pure human Dvl2 DIX domain mono-ubiquitinated at two lysines (K54 and K58) by genetically encoded orthogonal protection with activated ligation (GOPAL), to investigate their effect on DIX polymerization. We show that the ubiquitination of DIX at K54 blocks its polymerization in solution, whereas DIX58-Ub remains oligomerization-competent. DUB profiling identified 28 DUBs that cleave DIX-ubiquitin conjugates, half of which prefer, or are specific for, DIX54-Ub, including Cezanne and CYLD. These DUBs thus have the potential to promote Dvl polymerization and signalosome formation, rather than antagonize it as previously thought for CYLD.

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