4WHA image
Deposition Date 2014-09-21
Release Date 2014-11-12
Last Version Date 2023-09-27
Entry Detail
PDB ID:
4WHA
Keywords:
Title:
Lipoxygenase-1 (soybean) L546A/L754A mutant
Biological Source:
Source Organism:
Glycine max (Taxon ID: 3847)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.17
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Seed linoleate 13S-lipoxygenase-1
Gene (Uniprot):LOX1.1
Mutagens:L546A, L754A
Chain IDs:A
Chain Length:839
Number of Molecules:1
Biological Source:Glycine max
Primary Citation
Extremely elevated room-temperature kinetic isotope effects quantify the critical role of barrier width in enzymatic C-H activation.
J.Am.Chem.Soc. 136 8157 8160 (2014)
PMID: 24884374 DOI: 10.1021/ja502726s

Abstact

The enzyme soybean lipoxygenase (SLO) has served as a prototype for hydrogen-tunneling reactions, as a result of its unusual kinetic isotope effects (KIEs) and their temperature dependencies. Using a synergy of kinetic, structural, and theoretical studies, we show how the interplay between donor-acceptor distance and active-site flexibility leads to catalytic behavior previously predicted by quantum tunneling theory. Modification of the size of two hydrophobic residues by site-specific mutagenesis in SLO reduces the reaction rate 10(4)-fold and is accompanied by an enormous and unprecedented room-temperature KIE. Fitting of the kinetic data to a non-adiabatic model implicates an expansion of the active site that cannot be compensated by donor-acceptor distance sampling. A 1.7 Å resolution X-ray structure of the double mutant further indicates an unaltered backbone conformation, almost identical side-chain conformations, and a significantly enlarged active-site cavity. These findings show the compelling property of room-temperature hydrogen tunneling within a biological context and demonstrate the very high sensitivity of such tunneling to barrier width.

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Primary Citation of related structures