4WH9 image
Deposition Date 2014-09-20
Release Date 2014-12-10
Last Version Date 2023-09-27
Entry Detail
PDB ID:
4WH9
Title:
Structure of the CDC25B Phosphatase Catalytic Domain with Bound Inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.15
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:M-phase inducer phosphatase 2
Gene (Uniprot):CDC25B
Mutations:C473S
Chain IDs:A
Chain Length:183
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Inhibition of CDC25B Phosphatase Through Disruption of Protein-Protein Interaction.
Acs Chem.Biol. 10 390 394 (2015)
PMID: 25423142 DOI: 10.1021/cb500883h

Abstact

CDC25 phosphatases are key cell cycle regulators and represent very attractive but challenging targets for anticancer drug discovery. Here, we explored whether fragment-based screening represents a valid approach to identify inhibitors of CDC25B. This resulted in identification of 2-fluoro-4-hydroxybenzonitrile, which directly binds to the catalytic domain of CDC25B. Interestingly, NMR data and the crystal structure demonstrate that this compound binds to the pocket distant from the active site and adjacent to the protein-protein interaction interface with CDK2/Cyclin A substrate. Furthermore, we developed a more potent analogue that disrupts CDC25B interaction with CDK2/Cyclin A and inhibits dephosphorylation of CDK2. Based on these studies, we provide a proof of concept that targeting CDC25 phosphatases by inhibiting their protein-protein interactions with CDK2/Cyclin A substrate represents a novel, viable opportunity to target this important class of enzymes.

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Primary Citation of related structures