4WGF image
Deposition Date 2014-09-18
Release Date 2015-07-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4WGF
Keywords:
Title:
YcaC from Pseudomonas aeruginosa with hexane-2,5-diol and covalent acrylamide
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.34 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Probable hydrolase
Gene (Uniprot):PA1202
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:205
Number of Molecules:8
Biological Source:Pseudomonas aeruginosa
Primary Citation
Crystal Structure of a Hidden Protein, YcaC, a Putative Cysteine Hydrolase from Pseudomonas aeruginosa, with and without an Acrylamide Adduct.
Int J Mol Sci 16 15971 15984 (2015)
PMID: 26184183 DOI: 10.3390/ijms160715971

Abstact

As part of the ongoing effort to functionally and structurally characterize virulence factors in the opportunistic pathogen Pseudomonas aeruginosa, we determined the crystal structure of YcaC co-purified with the target protein at resolutions of 2.34 and 2.56 Å without a priori knowledge of the protein identity or experimental phases. The three-dimensional structure of YcaC adopts a well-known cysteine hydrolase fold with the putative active site residues conserved. The active site cysteine is covalently bound to propionamide in one crystal form, whereas the second form contains an S-mercaptocysteine. The precise biological function of YcaC is unknown; however, related prokaryotic proteins have functions in antibacterial resistance, siderophore production and NADH biosynthesis. Here, we show that YcaC is exceptionally well conserved across both bacterial and fungal species despite being non-ubiquitous. This suggests that whilst YcaC may not be part of an integral pathway, the function could confer a significant evolutionary advantage to microbial life.

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