4WE1 image
Entry Detail
PDB ID:
4WE1
Keywords:
HYDROLASE
Title:
Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 5-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-2-naphthonitrile (JLJ600)
Biological Source:
Source Organism:
Human immunodeficiency virus type 1 group M subtype B
Host Organism:
Escherichia coli
PDB Version:
Deposition Date:
2014-09-09
Release Date:
2014-12-03
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.49 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
C 1 2 1
4WE1 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:Gag-Pol polyprotein
Mutations:C280S, K172A, K173A
Chain IDs:A
Chain Length:557
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1 group M subtype B
UniProt ID:P03366 Pfam ID:PF00078, PF06817, PF06815, PF00075 EC:3.1.26.13
Protein Blast
Polymer Type:polypeptide(L)
Description:Gag-Pol polyprotein
Mutations:C280S
Chain IDs:B
Chain Length:428
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1 group M subtype B
UniProt ID:P03366 Pfam ID:PF00078, PF06817, PF06815, PF00075 EC:3.1.26.13
Ligand Molecules
3LQ
MG
SO4
Primary Citation
Picomolar Inhibitors of HIV-1 Reverse Transcriptase: Design and Crystallography of Naphthyl Phenyl Ethers.
Acs Med.Chem.Lett. 5 1259 1262 (2014)
PMID: 25408842 DOI: 10.1021/ml5003713

Abstact

Catechol diethers that incorporate a 6-cyano-1-naphthyl substituent have been explored as non-nucleoside inhibitors of HIV-1 reverse transcriptase (NNRTIs). Promising compounds are reported that show midpicomolar activity against the wild-type virus and sub-20 nM activity against viral variants bearing Tyr181Cys and Lys103Asn mutations in HIV-RT. An X-ray crystal structure at 2.49 Å resolution is also reported for the key compound 6e with HIV-RT.

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Protein

Chemical

Disease

Primary Citation of related structures
4H4M
4H4O
4MFB