4WBC image
Deposition Date 1999-03-04
Release Date 1999-03-12
Last Version Date 2024-11-06
Entry Detail
PDB ID:
4WBC
Title:
2.13 A STRUCTURE OF A KUNITZ-TYPE WINGED BEAN CHYMOTRYPSIN INHIBITOR PROTEIN
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.14 Å
R-Value Free:
0.25
R-Value Work:
0.19
Space Group:
P 61 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROTEIN (CHYMOTRYPSIN INHIBITOR)
Chain IDs:A
Chain Length:183
Number of Molecules:1
Biological Source:Psophocarpus tetragonolobus
Ligand Molecules
Primary Citation
Cryocrystallography of a Kunitz-type serine protease inhibitor: the 90 K structure of winged bean chymotrypsin inhibitor (WCI) at 2.13 A resolution.
Acta Crystallogr.,Sect.D 55 1814 1821 (1999)
PMID: 10531477 DOI: 10.1107/S0907444999009877

Abstact

The crystal structure of a Kunitz-type double-headed alpha--chymotrypsin inhibitor from winged bean seeds has been refined at 2.13 A resolution using data collected from cryo-cooled (90 K) crystals which belong to the hexagonal space group P6(1)22 with unit-cell parameters a = b = 60.84, c = 207.91 A. The volume of the unit cell is reduced by 5.3% on cooling. The refinement converged to an R value of 20.0% (R(free) = 25.8%) for 11100 unique reflections and the model shows good stereochemistry, with r.m.s. deviations from ideal values for bond lengths and bond angles of 0.011 A and 1.4 degrees, respectively. The structural architecture of the protein consists of 12 antiparallel beta-strands joined in the form of a characteristic beta-trefoil fold, with the two reactive-site regions, Asn38-Leu43 and Gln63-Phe68, situated on two external loops. Although the overall protein fold is the same as that of the room-temperature model, some conformational changes are observed in the loop regions and in the side chains of a few surface residues. A total of 176 ordered water molecules and five sulfate ions are included in the model.

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Primary Citation of related structures