4V94 image
Entry Detail
PDB ID:
4V94
Keywords:
Title:
Molecular architecture of the eukaryotic chaperonin TRiC/CCT derived by a combination of chemical crosslinking and mass-spectrometry, XL-MS
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2012-01-11
Release Date:
2014-07-09
Method Details:
Experimental Method:
Resolution:
3.80 Å
R-Value Free:
0.30
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:T-complex protein 1 subunit alpha
Chain IDs:G (auth: A), O (auth: I), W (auth: a), EA (auth: i)
Chain Length:559
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:T-complex protein 1 subunit beta
Chain IDs:E (auth: B), M (auth: J), U (auth: b), CA (auth: j)
Chain Length:527
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:T-complex protein 1 subunit gamma
Chain IDs:H (auth: C), P (auth: K), X (auth: c), FA (auth: k)
Chain Length:590
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:T-complex protein 1 subunit delta
Mutations:G345D
Chain IDs:F (auth: D), N (auth: L), V (auth: d), DA (auth: l)
Chain Length:528
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:T-complex protein 1 subunit epsilon
Chain IDs:D (auth: E), L (auth: M), T (auth: e), BA (auth: m)
Chain Length:562
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:T-complex protein 1 subunit zeta
Chain IDs:A (auth: F), I (auth: N), Q (auth: f), Y (auth: n)
Chain Length:546
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:T-complex protein 1 subunit eta
Chain IDs:C (auth: G), K (auth: O), S (auth: g), AA (auth: o)
Chain Length:550
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:T-complex protein 1 subunit theta
Chain IDs:B (auth: H), J (auth: P), R (auth: h), Z (auth: p)
Chain Length:568
Number of Molecules:4
Biological Source:Saccharomyces cerevisiae
Primary Citation

Abstact

TRiC/CCT is a highly conserved and essential chaperonin that uses ATP cycling to facilitate folding of approximately 10% of the eukaryotic proteome. This 1 MDa hetero-oligomeric complex consists of two stacked rings of eight paralogous subunits each. Previously proposed TRiC models differ substantially in their subunit arrangements and ring register. Here, we integrate chemical crosslinking, mass spectrometry, and combinatorial modeling to reveal the definitive subunit arrangement of TRiC. In vivo disulfide mapping provided additional validation for the crosslinking-derived arrangement as the definitive TRiC topology. This subunit arrangement allowed the refinement of a structural model using existing X-ray diffraction data. The structure described here explains all available crosslink experiments, provides a rationale for previously unexplained structural features, and reveals a surprising asymmetry of charges within the chaperonin folding chamber.

Legend

Protein

Chemical

Disease

Primary Citation of related structures