4V7Q image
Deposition Date 2010-05-13
Release Date 2014-07-09
Last Version Date 2024-10-16
Entry Detail
PDB ID:
4V7Q
Keywords:
Title:
Atomic model of an infectious rotavirus particle
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Core scaffold protein
Chain IDs:A (auth: AA), B (auth: AB)
Chain Length:800
Number of Molecules:2
Biological Source:Simian rotavirus A
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Intermediate capsid protein VP6
Chain IDs:C (auth: AC), D (auth: AD), E (auth: AE), F (auth: AF), G (auth: AG), H (auth: AH), I (auth: AI), J (auth: AJ), K (auth: AK), L (auth: AL), M (auth: AM), N (auth: AN), O (auth: AO)
Chain Length:397
Number of Molecules:13
Biological Source:Rhesus rotavirus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer layer protein VP7
Chain IDs:P (auth: BA), Q (auth: BF), R (auth: BG), S (auth: BH), T (auth: BI), U (auth: BJ), V (auth: BK), W (auth: BL), X (auth: BM), Y (auth: BN), Z (auth: BO), AA (auth: BP), BA (auth: BQ)
Chain Length:276
Number of Molecules:13
Biological Source:Simian rotavirus A
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Outer capsid protein VP4
Chain IDs:CA (auth: BX), DA (auth: BY), EA (auth: BZ)
Chain Length:776
Number of Molecules:3
Biological Source:Simian rotavirus A
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN BA ASN GLYCOSYLATION SITE
Primary Citation
Atomic model of an infectious rotavirus particle.
Embo J. 30 408 416 (2011)
PMID: 21157433 DOI: 10.1038/emboj.2010.322

Abstact

Non-enveloped viruses of different types have evolved distinct mechanisms for penetrating a cellular membrane during infection. Rotavirus penetration appears to occur by a process resembling enveloped-virus fusion: membrane distortion linked to conformational changes in a viral protein. Evidence for such a mechanism comes from crystallographic analyses of fragments of VP4, the rotavirus-penetration protein, and infectivity analyses of structure-based VP4 mutants. We describe here the structure of an infectious rotavirus particle determined by electron cryomicroscopy (cryoEM) and single-particle analysis at about 4.3 Å resolution. The cryoEM image reconstruction permits a nearly complete trace of the VP4 polypeptide chain, including the positions of most side chains. It shows how the two subfragments of VP4 (VP8(*) and VP5(*)) retain their association after proteolytic cleavage, reveals multiple structural roles for the β-barrel domain of VP5(*), and specifies interactions of VP4 with other capsid proteins. The virion model allows us to integrate structural and functional information into a coherent mechanism for rotavirus entry.

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