ISDA: 4V6I

Deposition Date 2010-10-12

Release Date 2014-07-09

Last Version Date 2024-02-28

Entry Detail

PDB ID:

4V6I

Keywords:

RIBOSOME

Title:

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Biological Source:

Source Organism:

Saccharomyces cerevisiae (Taxon ID: 4932)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

8.80 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS0 (S2p)
Gene (Uniprot):RPS0A
Chain IDs:B (auth: AA)
Chain Length:252
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P32905 Pfam ID:PF00318

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS3 (S3p)
Gene (Uniprot):RPS3
Chain IDs:C (auth: AB)
Chain Length:37
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05750 Pfam ID:PF07650, PF00189

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS9 (S4p)
Gene (Uniprot):RPS9A
Chain IDs:E (auth: AC)
Chain Length:26
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:O13516 Pfam ID:PF00163, PF01479

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS4 (S4e)
Chain IDs:D (auth: AD)
Chain Length:261
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS2 (S5p)
Gene (Uniprot):RPS2
Chain IDs:F (auth: AE)
Chain Length:254
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P25443 Pfam ID:PF00333, PF03719

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS5 (S7p)
Gene (Uniprot):RPS5
Chain IDs:H (auth: AF)
Chain Length:225
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P26783 Pfam ID:PF00177

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS7 (S7e)
Chain IDs:G (auth: AG)
Chain Length:144
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS22 (S8p)
Gene (Uniprot):RPS22A
Chain IDs:I (auth: AH)
Chain Length:130
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C0W1 Pfam ID:PF00410

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS16 (S9p)
Chain IDs:J (auth: AI)
Chain Length:143
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS20 (S10p)
Gene (Uniprot):RPS20
Chain IDs:K (auth: AJ)
Chain Length:121
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P38701 Pfam ID:PF00338

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS14 (S11p)
Gene (Uniprot):RPS14A
Chain IDs:L (auth: AK)
Chain Length:137
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P06367 Pfam ID:PF00411

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS23 (S12p)
Chain IDs:M (auth: AL)
Chain Length:145
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS18 (S13p)
Chain IDs:N (auth: AM)
Chain Length:146
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS29 (S14p)
Gene (Uniprot):RPS29A
Chain IDs:O (auth: AN)
Chain Length:56
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P41057 Pfam ID:PF00253

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS13 (S15p)
Gene (Uniprot):RPS13
Chain IDs:P (auth: AO)
Chain Length:151
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05756 Pfam ID:PF08069, PF00312

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS11 (S17p)
Chain IDs:R (auth: AP)
Chain Length:156
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS17 (S17e)
Gene (Uniprot):RPS17A
Chain IDs:Q (auth: AQ)
Chain Length:136
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P02407 Pfam ID:PF00833

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS15 (S19p)
Gene (Uniprot):RPS15
Chain IDs:S (auth: AR)
Chain Length:142
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q01855 Pfam ID:PF00203

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS19 (S19e)
Gene (Uniprot):RPS19A
Chain IDs:T (auth: AS)
Chain Length:144
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P07280 Pfam ID:PF01090

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS21 (S21e)
Gene (Uniprot):RPS21A
Chain IDs:U (auth: AT)
Chain Length:87
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C0V8 Pfam ID:PF01249

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Chain IDs:CA (auth: AU)
Chain Length:135
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS25 (S25e)
Gene (Uniprot):RPS25A
Chain IDs:V (auth: AV)
Chain Length:108
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q3E792 Pfam ID:PF03297

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS26 (S26e)
Chain IDs:W (auth: AW)
Chain Length:93
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS27 (S27e)
Gene (Uniprot):RPS27A
Chain IDs:X (auth: AX)
Chain Length:82
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P35997 Pfam ID:PF01667

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS28 (S28e)
Gene (Uniprot):RPS28A
Chain IDs:Y (auth: AY)
Chain Length:67
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q3E7X9 Pfam ID:PF01200

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein rpS30 (S30e)
Chain IDs:Z (auth: AZ)
Chain Length:63
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein RACK1 (RACK1)
Gene (Uniprot):ASC1
Chain IDs:A (auth: Aa)
Chain Length:252
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P38011 Pfam ID:PF00400

Polymer Type:polypeptide(L)
Molecule:Unknown 40S ribosomal protein XS1
Chain IDs:AA (auth: Ab)
Chain Length:37
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polypeptide(L)
Molecule:Unknown 40S ribosomal protein XS2
Chain IDs:BA (auth: Ac)
Chain Length:26
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL1 (L1p)
Chain IDs:DA (auth: BA)
Chain Length:217
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL2 (L2p)
Chain IDs:EA (auth: BB)
Chain Length:254
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL3 (L3p)
Gene (Uniprot):RPL3
Chain IDs:FA (auth: BC)
Chain Length:388
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P14126 Pfam ID:PF00297

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL4 (L4p)
Gene (Uniprot):RPL4A
Chain IDs:GA (auth: BD)
Chain Length:362
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P10664 Pfam ID:PF00573, PF14374

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL11 (L5p)
Gene (Uniprot):RPL11A
Chain IDs:HA (auth: BE)
Chain Length:244
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C0W9 Pfam ID:PF00281, PF00673

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL9 (L6p)
Gene (Uniprot):RPL9A
Chain IDs:JA (auth: BF)
Chain Length:191
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05738 Pfam ID:PF00347

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL6 (L6e)
Gene (Uniprot):RPL6A
Chain IDs:IA (auth: BG)
Chain Length:113
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q02326 Pfam ID:PF01159

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL8 (L7ae)
Gene (Uniprot):RPL8A
Chain IDs:KA (auth: BH)
Chain Length:130
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P17076 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL10 (L10e)
Gene (Uniprot):RPL10
Chain IDs:BC (auth: BI)
Chain Length:118
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P41805 Pfam ID:PF00252

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL12 (L11p)
Chain IDs:MA (auth: BJ)
Chain Length:107
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL16 (L13p)
Gene (Uniprot):RPL16A
Chain IDs:NA (auth: BK)
Chain Length:100
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P26784 Pfam ID:PF00572

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL13 (L13e)
Chain IDs:ZB (auth: BL)
Chain Length:170
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL23 (L14p)
Chain IDs:PA (auth: BM)
Chain Length:137
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL14 (L14e)
Chain IDs:OA (auth: BN)
Chain Length:78
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P36105 Pfam ID:PF00467, PF01929

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL28 (L15p)
Gene (Uniprot):RPL28
Chain IDs:RA (auth: BO)
Chain Length:149
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P02406 Pfam ID:PF00828

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL15 (L15e)
Gene (Uniprot):RPL15A
Chain IDs:QA (auth: BP)
Chain Length:52
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05748 Pfam ID:PF00827

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL5 (L18p)
Gene (Uniprot):RPL5
Chain IDs:YB (auth: BQ)
Chain Length:297
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P26321 Pfam ID:PF17144, PF14204

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL18 (L18e)
Chain IDs:SA (auth: BR)
Chain Length:106
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL20 (L18ae)
Chain IDs:AC (auth: BS)
Chain Length:167
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q943F3 Pfam ID:PF01775

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL19 (L19e)
Chain IDs:TA (auth: BT)
Chain Length:106
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL21 (L21e)
Gene (Uniprot):RPL21A
Chain IDs:UA (auth: BU)
Chain Length:106
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q02753 Pfam ID:PF01157

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL17 (L22p)
Gene (Uniprot):RPL17A
Chain IDs:WA (auth: BV)
Chain Length:170
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05740 Pfam ID:PF00237

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL22 (L22e)
Gene (Uniprot):RPL22A
Chain IDs:VA (auth: BW)
Chain Length:121
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05749 Pfam ID:PF01776

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL25 (L23p)
Gene (Uniprot):RPL25
Chain IDs:XA (auth: BX)
Chain Length:21
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P04456 Pfam ID:PF03939, PF00276

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL26 (L24p)
Gene (Uniprot):RPL26A
Chain IDs:ZA (auth: BY)
Chain Length:123
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05743 Pfam ID:PF16906, PF00467

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL24 (L24e)
Gene (Uniprot):RPL24A
Chain IDs:YA (auth: BZ)
Chain Length:155
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P04449 Pfam ID:PF01246

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL27 (L27e)
Gene (Uniprot):RPL27A
Chain IDs:AB (auth: Ba)
Chain Length:217
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C2H6 Pfam ID:PF01777

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL35 (L29p)
Chain IDs:CB (auth: Bc)
Chain Length:388
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL29 (L29e)
Gene (Uniprot):RPL29
Chain IDs:BB (auth: Bd)
Chain Length:362
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05747 Pfam ID:PF01779

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL7 (L30p)
Gene (Uniprot):RPL7A
Chain IDs:EB (auth: Be)
Chain Length:244
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05737 Pfam ID:PF08079, PF00327

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL30 (L30e)
Gene (Uniprot):RPL30
Chain IDs:DB (auth: Bf)
Chain Length:191
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P14120 Pfam ID:PF01248

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL31 (L31e)
Gene (Uniprot):RPL31A
Chain IDs:FB (auth: Bg)
Chain Length:113
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0C2H8 Pfam ID:PF01198

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein pL32 (L32e)
Gene (Uniprot):RPL32
Chain IDs:GB (auth: Bh)
Chain Length:130
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P38061 Pfam ID:PF01655

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL34 (L34e)
Gene (Uniprot):RPL34A
Chain IDs:HB (auth: Bi)
Chain Length:118
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P87262 Pfam ID:PF01199

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL33 (L35ae)
Gene (Uniprot):RPL33A
Chain IDs:IB (auth: Bj)
Chain Length:107
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05744 Pfam ID:PF01247

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL36 (L36e)
Gene (Uniprot):RPL36A
Chain IDs:JB (auth: Bk)
Chain Length:100
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05745 Pfam ID:PF01158

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL37 (L37e)
Gene (Uniprot):RPL37A
Chain IDs:LB (auth: Bl)
Chain Length:170
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P49166 Pfam ID:PF01907

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL43 (L37ae)
Chain IDs:KB (auth: Bm)
Chain Length:137
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL38 (L38e)
Gene (Uniprot):RPL38
Chain IDs:MB (auth: Bn)
Chain Length:78
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P49167 Pfam ID:PF01781

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL39 (L39e)
Gene (Uniprot):RPL39
Chain IDs:NB (auth: Bo)
Chain Length:149
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P04650 Pfam ID:PF00832

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL40 (L40e)
Gene (Uniprot):RPL40A
Chain IDs:OB (auth: Bp)
Chain Length:52
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P0CH08 Pfam ID:PF01020

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL41 (L41e)
Chain IDs:PB (auth: Bq)
Chain Length:297
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein rpL42 (L44e)
Chain IDs:QB (auth: Br)
Chain Length:106
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S acidic ribosomal protein rpP0 (L10P)
Gene (Uniprot):RPP0
Chain IDs:LA (auth: Bs)
Chain Length:167
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05317 Pfam ID:PF00466, PF17777, PF00428

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S acidic ribosomal protein rpP11 (P1)
Gene (Uniprot):RPP1A
Chain IDs:UB (auth: Bt), VB (auth: Bu)
Chain Length:106
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05318 Pfam ID:PF00428

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:60S acidic ribosomal protein (P2)
Gene (Uniprot):RPP2A
Chain IDs:WB (auth: Bv), XB (auth: Bw)
Chain Length:170
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

UniProt ID:P05319 Pfam ID:PF00428

Polymer Type:polypeptide(L)
Molecule:Unknown protein
Chain IDs:RB (auth: Bx), SB (auth: By)
Chain Length:21
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae

Polymer Type:polypeptide(L)
Molecule:Unknown protein
Chain IDs:TB (auth: Bz)
Chain Length:155
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:CC (auth: CA)
Chain Length:1800
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:P-SITE TRNA ASP
Chain IDs:DC (auth: CB)
Chain Length:75
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')
Chain IDs:EC (auth: CC)
Chain Length:11
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:25S rRNA
Chain IDs:FC (auth: DA)
Chain Length:3396
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:GC (auth: DB)
Chain Length:158
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:HC (auth: DC)
Chain Length:118
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

Ligand Molecules

Primary Citation

Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.

Armache, J.P, Jarasch, A, Anger, A.M, Villa, E, Becker, T, Bhushan, S, Jossinet, F, Habeck, M, Dindar, G, Franckenberg, S, Marquez, V, Mielke, T, Thomm, M, Berninghausen, O, Beatrix, B, Soding, J, Westhof, E, Wilson, D.N, Beckmann, R, Armache, J.P, Jarasch, A, Anger, A.M, Villa, E, Becker, T, Bhushan, S, Jossinet, F, Habeck, M, Dindar, G, Franckenberg, S, Marquez, V, Mielke, T, Thomm, M, Berninghausen, O, Beatrix, B, Soding, J, Westhof, E, Wilson, D.N, Beckmann, R.Show

Proc.Natl.Acad.Sci.USA 107 19748 19753 (2010)

PMID: 20980660 DOI: 10.1073/pnas.1009999107

Abstact

Protein biosynthesis, the translation of the genetic code into polypeptides, occurs on ribonucleoprotein particles called ribosomes. Although X-ray structures of bacterial ribosomes are available, high-resolution structures of eukaryotic 80S ribosomes are lacking. Using cryoelectron microscopy and single-particle reconstruction, we have determined the structure of a translating plant (Triticum aestivum) 80S ribosome at 5.5-Å resolution. This map, together with a 6.1-Å map of a Saccharomyces cerevisiae 80S ribosome, has enabled us to model ∼98% of the rRNA. Accurate assignment of the rRNA expansion segments (ES) and variable regions has revealed unique ES-ES and r-protein-ES interactions, providing insight into the structure and evolution of the eukaryotic ribosome.

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