4V4U image
Deposition Date 2005-03-03
Release Date 2014-07-09
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4V4U
Keywords:
Title:
The quasi-atomic model of Human Adenovirus type 5 capsid
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
10.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PENTON PROTEIN
Gene (Uniprot):L2
Chain IDs:A, B, C, D, E
Chain Length:523
Number of Molecules:5
Biological Source:HUMAN ADENOVIRUS 2
Polymer Type:polypeptide(L)
Molecule:HEXON PROTEIN
Gene (Uniprot):L3
Chain IDs:K (auth: F), L (auth: G), M (auth: H), N (auth: I), O (auth: J), P (auth: K), Q (auth: L), R (auth: M), S (auth: N), T (auth: O), U (auth: P), V (auth: Q)
Chain Length:951
Number of Molecules:12
Biological Source:HUMAN ADENOVIRUS TYPE 5
Polymer Type:polypeptide(L)
Molecule:N-TERMINAL PEPTIDE OF FIBER PROTEIN
Chain IDs:F (auth: S), G (auth: T), H (auth: U), I (auth: V), J (auth: W)
Chain Length:10
Number of Molecules:5
Biological Source:HUMAN ADENOVIRUS TYPE 2
Ligand Molecules
Primary Citation
A Quasi-Atomic Model of Human Adenovirus Type 5 Capsid.
Embo J. 24 1645 ? (2005)
PMID: 15861131 DOI: 10.1038/SJ.EMBOJ.7600653

Abstact

Adenoviruses infect a wide range of vertebrates including humans. Their icosahedral capsids are composed of three major proteins: the trimeric hexon forms the facets and the penton, a noncovalent complex of the pentameric penton base and trimeric fibre proteins, is located at the 12 capsid vertices. Several proteins (IIIa, VI, VIII and IX) stabilise the capsid. We have obtained a 10 A resolution map of the human adenovirus 5 by image analysis from cryo-electron micrographs (cryoEMs). This map, in combination with the X-ray structures of the penton base and hexon, was used to build a quasi-atomic model of the arrangement of the two major capsid components and to analyse the hexon-hexon and hexon-penton interactions. The secondary proteins, notably VIII, were located by comparing cryoEM maps of native and pIX deletion mutant virions. Minor proteins IX and IIIa are located on the outside of the capsid, whereas protein VIII is organised with a T=2 lattice on the inner face of the capsid. The capsid organisation is compared with the known X-ray structure of bacteriophage PRD1.

Legend

Protein

Chemical

Disease

Primary Citation of related structures