4V4K image
Entry Detail
PDB ID:
4V4K
Keywords:
Title:
Bacteriophage P22 Portal Protein bound to middle Tail Factor GP4. This file contain the second biological assembly
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2010-04-19
Release Date:
2014-07-09
Method Details:
Experimental Method:
Resolution:
3.25 Å
R-Value Free:
0.23
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:PORTAL PROTEIN
Chain IDs:A (auth: M), B (auth: N), C (auth: O), D (auth: P), E (auth: Q), F (auth: R), G (auth: S), H (auth: T), I (auth: U), J (auth: V), K (auth: W), L (auth: X), Y (auth: A), Z (auth: B), AA (auth: C), BA (auth: D), CA (auth: E), DA (auth: F), EA (auth: G), FA (auth: H), GA (auth: I), HA (auth: J), IA (auth: K), JA (auth: L)
Chain Length:166
Number of Molecules:24
Biological Source:ENTEROBACTERIA PHAGE P22
Polymer Type:polypeptide(L)
Description:PACKAGED DNA STABILIZATION PROTEIN GP4
Mutations:YES
Chain IDs:M (auth: k), N (auth: l), O (auth: m), P (auth: n), Q (auth: o), R (auth: p), S (auth: q), T (auth: r), U (auth: s), V (auth: t), W (auth: u), X (auth: v), KA (auth: Y), LA (auth: Z), MA (auth: a), NA (auth: b), OA (auth: c), PA (auth: d), QA (auth: e), RA (auth: f), SA (auth: g), TA (auth: h), UA (auth: i), VA (auth: j)
Chain Length:166
Number of Molecules:24
Biological Source:ENTEROBACTERIA PHAGE P22
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Three-dimensional structure of a viral genome-delivery portal vertex.
Nat.Struct.Mol.Biol. 18 597 603 (2011)
PMID: 21499245 DOI: 10.1038/nsmb.2023

Abstact

DNA viruses such as bacteriophages and herpesviruses deliver their genome into and out of the capsid through large proteinaceous assemblies, known as portal proteins. Here, we report two snapshots of the dodecameric portal protein of bacteriophage P22. The 3.25-Å-resolution structure of the portal-protein core bound to 12 copies of gene product 4 (gp4) reveals a ~1.1-MDa assembly formed by 24 proteins. Unexpectedly, a lower-resolution structure of the full-length portal protein unveils the unique topology of the C-terminal domain, which forms a ~200-Å-long α-helical barrel. This domain inserts deeply into the virion and is highly conserved in the Podoviridae family. We propose that the barrel domain facilitates genome spooling onto the interior surface of the capsid during genome packaging and, in analogy to a rifle barrel, increases the accuracy of genome ejection into the host cell.

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Primary Citation of related structures