4V3D image
Entry Detail
PDB ID:
4V3D
Title:
The CIDRa domain from HB3var03 PfEMP1 bound to endothelial protein C receptor
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2014-10-17
Release Date:
2014-12-17
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HB3VAR03 CIDRA DOMAIN
Chain IDs:A, C
Chain Length:251
Number of Molecules:2
Biological Source:PLASMODIUM FALCIPARUM
Polymer Type:polypeptide(L)
Description:ENDOTHELIAL PROTEIN C RECEPTOR
Chain IDs:B, D
Chain Length:170
Number of Molecules:2
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN B ASN GLYCOSYLATION SITE
Primary Citation
Structural Conservation Despite Huge Sequence Diversity Allows Epcr Binding by the Pfemp1 Family Implicated in Severe Childhood Malaria.
Cell Host Microbe. 17 118 ? (2015)
PMID: 25482433 DOI: 10.1016/J.CHOM.2014.11.007

Abstact

The PfEMP1 family of surface proteins is central for Plasmodium falciparum virulence and must retain the ability to bind to host receptors while also diversifying to aid immune evasion. The interaction between CIDRα1 domains of PfEMP1 and endothelial protein C receptor (EPCR) is associated with severe childhood malaria. We combine crystal structures of CIDRα1:EPCR complexes with analysis of 885 CIDRα1 sequences, showing that the EPCR-binding surfaces of CIDRα1 domains are conserved in shape and bonding potential, despite dramatic sequence diversity. Additionally, these domains mimic features of the natural EPCR ligand and can block this ligand interaction. Using peptides corresponding to the EPCR-binding region, antibodies can be purified from individuals in malaria-endemic regions that block EPCR binding of diverse CIDRα1 variants. This highlights the extent to which such a surface protein family can diversify while maintaining ligand-binding capacity and identifies features that should be mimicked in immunogens to prevent EPCR binding.

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Primary Citation of related structures