4V2M image
Entry Detail
PDB ID:
4V2M
Keywords:
Title:
Crystallographic structure of thioredoxin from Litopenaeus vannamei: Radiation damage effect at 34 MGy, focused in disulfide bonds.
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-10-10
Release Date:
2015-01-14
Method Details:
Experimental Method:
Resolution:
1.84 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32 1 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:THIOREDOXIN
Mutations:YES
Chain IDs:A, B
Chain Length:105
Number of Molecules:2
Biological Source:LITOPENAEUS VANNAMEI
Primary Citation
Crystallographic Studies Evidencing the High Energy Tolerance to Disrupting the Interface Disulfide Bond of Thioredoxin 1 from White Leg Shrimp Litopenaeus Vannamei.
Molecules 19 21113 ? (2014)
PMID: 25517346 DOI: 10.3390/MOLECULES191221113

Abstact

Thioredoxin (Trx) is a small 12-kDa redox protein that catalyzes the reduction of disulfide bonds in proteins from different biological systems. A recent study of the crystal structure of white leg shrimp thioredoxin 1 from Litopenaeus vannamei (LvTrx) revealed a dimeric form of the protein mediated by a covalent link through a disulfide bond between Cys73 from each monomer. In the present study, X-ray-induced damage in the catalytic and the interface disulfide bond of LvTrx was studied at atomic resolution at different transmission energies of 8% and 27%, 12.8 keV at 100 K in the beamline I-24 at Diamond Light Source. We found that at an absorbed dose of 32 MGy, the X-ray induces the cleavage of the disulfide bond of each catalytic site; however, the interface disulfide bond was cleaved at an X-ray adsorbed dose of 85 MGy; despite being the most solvent-exposed disulfide bond in LvTrx (~50 Å2). This result clearly established that the interface disulfide bond is very stable and, therefore, less susceptible to being reduced by X-rays. In fact, these studies open the possibility of the existence in solution of a dimeric LvTrx.

Legend

Protein

Chemical

Disease

Primary Citation of related structures