4V2K image
Deposition Date 2014-10-10
Release Date 2015-02-18
Last Version Date 2024-11-06
Entry Detail
PDB ID:
4V2K
Keywords:
Title:
Crystal structure of the thiosulfate dehydrogenase TsdA in complex with thiosulfate
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.29 Å
R-Value Free:
0.15
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:THIOSULFATE DEHYDROGENASE
Gene (Uniprot):tsdA
Chain IDs:A
Chain Length:253
Number of Molecules:1
Biological Source:ALLOCHROMATIUM VINOSUM
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CSS A CYS S-MERCAPTOCYSTEINE
Primary Citation
Mechanism of Thiosulfate Oxidation in the Soxa Family of Cysteine-Ligated Cytochromes
J.Biol.Chem. 290 9209 ? (2015)
PMID: 25673696 DOI: 10.1074/JBC.M114.618025

Abstact

Thiosulfate dehydrogenase (TsdA) catalyzes the oxidation of two thiosulfate molecules to form tetrathionate and is predicted to use an unusual cysteine-ligated heme as the catalytic cofactor. We have determined the structure of Allochromatium vinosum TsdA to a resolution of 1.3 Å. This structure confirms the active site heme ligation, identifies a thiosulfate binding site within the active site cavity, and reveals an electron transfer route from the catalytic heme, through a second heme group to the external electron acceptor. We provide multiple lines of evidence that the catalytic reaction proceeds through the intermediate formation of a S-thiosulfonate derivative of the heme cysteine ligand: the cysteine is reactive and is accessible to electrophilic attack; cysteine S-thiosulfonate is formed by the addition of thiosulfate or following the reverse reaction with tetrathionate; the S-thiosulfonate modification is removed through catalysis; and alkylating the cysteine blocks activity. Active site amino acid residues required for catalysis were identified by mutagenesis and are inferred to also play a role in stabilizing the S-thiosulfonate intermediate. The enzyme SoxAX, which catalyzes the first step in the bacterial Sox thiosulfate oxidation pathway, is homologous to TsdA and can be inferred to use a related catalytic mechanism.

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