4V1T image
Deposition Date 2014-10-02
Release Date 2015-01-14
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4V1T
Keywords:
Title:
Heterocyclase in complex with substrate and Cofactor
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.14 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:LYND
Gene (Uniprot):L8106_29055
Chain IDs:A, B
Chain Length:775
Number of Molecules:2
Biological Source:LYNGBYA AESTUARII
Polymer Type:polypeptide(L)
Molecule:PATE
Chain IDs:C, D
Chain Length:64
Number of Molecules:2
Biological Source:UNCULTURED PROCHLORON SP.
Primary Citation
Structural Analysis of Leader Peptide Binding Enables Leader-Free Cyanobactin Processing
Nat.Chem.Biol. 11 558 ? (2015)
PMID: 26098679 DOI: 10.1038/NCHEMBIO.1841

Abstact

Regioselective modification of amino acids within the context of a peptide is common to a number of biosynthetic pathways, and many of the resulting products have potential as therapeutics. The ATP-dependent enzyme LynD heterocyclizes multiple cysteine residues to thiazolines within a peptide substrate. The enzyme requires the substrate to have a conserved N-terminal leader for full activity. Catalysis is almost insensitive to immediately flanking residues in the substrate, suggesting that recognition occurs distant from the active site. Nucleotide and peptide substrate co-complex structures of LynD reveal that the substrate leader peptide binds to and extends the β-sheet of a conserved domain of LynD, whereas catalysis is accomplished in another conserved domain. The spatial segregation of catalysis from recognition combines seemingly contradictory properties of regioselectivity and promiscuity, and it appears to be a conserved strategy in other peptide-modifying enzymes. A variant of LynD that efficiently processes substrates without a leader peptide has been engineered.

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Primary Citation of related structures