4V1D image
Deposition Date 2014-09-25
Release Date 2015-10-07
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4V1D
Title:
Ternary complex among two human derived single chain antibody fragments and Cn2 toxin from scorpion Centruroides noxius.
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
CENTRUROIDES NOXIUS (Taxon ID: 6878)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SINGLE CHAIN ANTIBODY FRAGMENT LR, HEAVY CHAIN
Chain IDs:A
Chain Length:117
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:SINGLE CHAIN ANTIBODY FRAGMENT LR, LIGHT CHAIN
Chain IDs:B
Chain Length:146
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:BETA-MAMMAL TOXIN CN2
Chain IDs:C
Chain Length:66
Number of Molecules:1
Biological Source:CENTRUROIDES NOXIUS
Polymer Type:polypeptide(L)
Molecule:SINGLE CHAIN ANTIBODY FRAGMENT RU1, HEAVY CHAIN
Chain IDs:D
Chain Length:124
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:SINGLE CHAIN ANTIBODY FRAGMENT RU1, LIGHT CHAIN
Chain IDs:E
Chain Length:149
Number of Molecules:1
Biological Source:HOMO SAPIENS
Primary Citation
Optimal Neutralization of Centruroides Noxius Venom is Understood Through a Structural Complex between Two Antibody Fragments and the Cn2 Toxin.
J.Biol.Chem. 291 1619 ? (2016)
PMID: 26589800 DOI: 10.1074/JBC.M115.685297

Abstact

The current trend of using recombinant antibody fragments in research to develop novel antidotes against scorpion stings has achieved excellent results. The polyclonal character of commercial antivenoms, obtained through the immunization of animals and which contain several neutralizing antibodies that recognize different epitopes on the toxins, guarantees the neutralization of the venoms. To avoid the use of animals, we aimed to develop an equivalent recombinant antivenom composed of a few neutralizing single chain antibody fragments (scFvs) that bind to two different epitopes on the scorpion toxins. In this study, we obtained scFv RU1 derived from scFv C1. RU1 showed a good capacity to neutralize the Cn2 toxin and whole venom of the scorpion Centruroides noxius. Previously, we had produced scFv LR, obtained from a different parental fragment (scFv 3F). LR also showed a similar neutralizing capacity. The simultaneous administration of both scFvs resulted in improved protection, which was translated as a rapid recovery of previously poisoned animals. The crystallographic structure of the ternary complex scFv LR-Cn2-scFv RU1 allowed us to identify the areas of interaction of both scFvs with the toxin, which correspond to non-overlapping sites. The epitope recognized by scFv RU1 seems to be related to a greater efficiency in the neutralization of the whole venom. In addition, the structural analysis of the complex helped us to explain the cross-reactivity of these scFvs and how they neutralize the venom.

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Primary Citation of related structures