4UX8 image
Entry Detail
PDB ID:
4UX8
Title:
RET recognition of GDNF-GFRalpha1 ligand by a composite binding site promotes membrane-proximal self-association
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2014-08-19
Release Date:
2014-10-01
Method Details:
Experimental Method:
Resolution:
24.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET
Mutations:YES
Chain IDs:A, B
Chain Length:607
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Description:GDNF FAMILY RECEPTOR ALPHA-1
Chain IDs:C, E
Chain Length:463
Number of Molecules:2
Biological Source:RATTUS NORVEGICUS
Polymer Type:polypeptide(L)
Description:GLIAL CELL LINE-DERIVED NEUROTROPHIC FACTOR
Chain IDs:D, F
Chain Length:134
Number of Molecules:2
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN F ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Ret Recognition of Gdnf-Gfralpha1 Ligand by a Composite Binding Site Promotes Membrane-Proximal Self-Association.
Cell Rep. 8 1894 ? (2014)
PMID: 25242331 DOI: 10.1016/J.CELREP.2014.08.040

Abstact

The RET receptor tyrosine kinase is essential to vertebrate development and implicated in multiple human diseases. RET binds a cell surface bipartite ligand comprising a GDNF family ligand and a GFRα coreceptor, resulting in RET transmembrane signaling. We present a hybrid structural model, derived from electron microscopy (EM) and low-angle X-ray scattering (SAXS) data, of the RET extracellular domain (RET(ECD)), GDNF, and GFRα1 ternary complex, defining the basis for ligand recognition. RET(ECD) envelopes the dimeric ligand complex through a composite binding site comprising four discrete contact sites. The GFRα1-mediated contacts are crucial, particularly close to the invariant RET calcium-binding site, whereas few direct contacts are made by GDNF, explaining how distinct ligand/coreceptor pairs are accommodated. The RET(ECD) cysteine-rich domain (CRD) contacts both ligand components and makes homotypic membrane-proximal interactions occluding three different antibody epitopes. Coupling of these CRD-mediated interactions suggests models for ligand-induced RET activation and ligand-independent oncogenic deregulation.

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Primary Citation of related structures