4UTB image
Deposition Date 2014-07-18
Release Date 2015-01-28
Last Version Date 2024-10-16
Entry Detail
PDB ID:
4UTB
Title:
Crystal structure of dengue 2 virus envelope glycoprotein in complex with the Fab fragment of the broadly neutralizing human antibody EDE2 A11
Biological Source:
Source Organism:
DENGUE VIRUS 2 (Taxon ID: 11060)
HOMO SAPIENS (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.85 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ENVELOPE GLYCOPROTEIN E
Chain IDs:A, B
Chain Length:422
Number of Molecules:2
Biological Source:DENGUE VIRUS 2
Polymer Type:polypeptide(L)
Molecule:BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11
Chain IDs:C (auth: H), D (auth: I)
Chain Length:283
Number of Molecules:2
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11
Chain IDs:E (auth: L), F (auth: M)
Chain Length:218
Number of Molecules:2
Biological Source:HOMO SAPIENS
Primary Citation

Abstact

Dengue disease is caused by four different flavivirus serotypes, which infect 390 million people yearly with 25% symptomatic cases and for which no licensed vaccine is available. Recent phase III vaccine trials showed partial protection, and in particular no protection for dengue virus serotype 2 (refs 3, 4). Structural studies so far have characterized only epitopes recognized by serotype-specific human antibodies. We recently isolated human antibodies potently neutralizing all four dengue virus serotypes. Here we describe the X-ray structures of four of these broadly neutralizing antibodies in complex with the envelope glycoprotein E from dengue virus serotype 2, revealing that the recognition determinants are at a serotype-invariant site at the E-dimer interface, including the exposed main chain of the E fusion loop and the two conserved glycan chains. This 'E-dimer-dependent epitope' is also the binding site for the viral glycoprotein prM during virus maturation in the secretory pathway of the infected cell, explaining its conservation across serotypes and highlighting an Achilles' heel of the virus with respect to antibody neutralization. These findings will be instrumental for devising novel immunogens to protect simultaneously against all four serotypes of dengue virus.

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Primary Citation of related structures