4USX image
Deposition Date 2014-07-16
Release Date 2015-07-22
Last Version Date 2024-01-10
Entry Detail
PDB ID:
4USX
Title:
The Structure of the C-terminal YadA-like domain of BPSL2063 from Burkholderia pseudomallei
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:TRIMERIC AUTOTRANSPORTER ADHESIN
Gene (Uniprot):BPSL2063
Chain IDs:A, B, C
Chain Length:371
Number of Molecules:3
Biological Source:BURKHOLDERIA PSEUDOMALLEI K96243
Ligand Molecules
Primary Citation
Selecting Soluble/Foldable Protein Domains Through Single-Gene or Genomic Orf Filtering: Structure of the Head Domain of Burkholderia Pseudomallei Antigen Bpsl2063.
Acta Crystallogr.,Sect.D 71 2227 ? (2015)
PMID: 26527140 DOI: 10.1107/S1399004715015680

Abstact

The 1.8 Å resolution crystal structure of a conserved domain of the potential Burkholderia pseudomallei antigen and trimeric autotransporter BPSL2063 is presented as a structural vaccinology target for melioidosis vaccine development. Since BPSL2063 (1090 amino acids) hosts only one conserved domain, and the expression/purification of the full-length protein proved to be problematic, a domain-filtering library was generated using β-lactamase as a reporter gene to select further BPSL2063 domains. As a result, two domains (D1 and D2) were identified and produced in soluble form in Escherichia coli. Furthermore, as a general tool, a genomic open reading frame-filtering library from the B. pseudomallei genome was also constructed to facilitate the selection of domain boundaries from the entire ORFeome. Such an approach allowed the selection of three potential protein antigens that were also produced in soluble form. The results imply the further development of ORF-filtering methods as a tool in protein-based research to improve the selection and production of soluble proteins or domains for downstream applications such as X-ray crystallography.

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Primary Citation of related structures