4URT image
Deposition Date 2014-07-02
Release Date 2014-09-10
Last Version Date 2024-10-09
Entry Detail
PDB ID:
4URT
Keywords:
Title:
The crystal structure of a fragment of netrin-1 in complex with FN5- FN6 of DCC
Biological Source:
Source Organism:
HOMO SAPIENS (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NETRIN-1
Gene (Uniprot):NTN1
Chain IDs:A
Chain Length:420
Number of Molecules:1
Biological Source:HOMO SAPIENS
Polymer Type:polypeptide(L)
Molecule:NETRIN RECEPTOR DCC
Gene (Uniprot):DCC
Chain IDs:B
Chain Length:206
Number of Molecules:1
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
The Crystal Structure of Netrin-1 in Complex with Dcc Reveals the Bi-Functionality of Netrin-1 as a Guidance Cue
Neuron 83 839 ? (2014)
PMID: 25123307 DOI: 10.1016/J.NEURON.2014.07.010

Abstact

Netrin-1 is a guidance cue that can trigger either attraction or repulsion effects on migrating axons of neurons, depending on the repertoire of receptors available on the growth cone. How a single chemotropic molecule can act in such contradictory ways has long been a puzzle at the molecular level. Here we present the crystal structure of netrin-1 in complex with the Deleted in Colorectal Cancer (DCC) receptor. We show that one netrin-1 molecule can simultaneously bind to two DCC molecules through a DCC-specific site and through a unique generic receptor binding site, where sulfate ions staple together positively charged patches on both DCC and netrin-1. Furthermore, we demonstrate that UNC5A can replace DCC on the generic receptor binding site to switch the response from attraction to repulsion. We propose that the modularity of binding allows for the association of other netrin receptors at the generic binding site, eliciting alternative turning responses.

Legend

Protein

Chemical

Disease

Primary Citation of related structures