4UPF image
Deposition Date 2014-06-16
Release Date 2014-08-20
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4UPF
Keywords:
Title:
Assembly principles of the unique cage formed by the ATPase RavA hexamer and the lysine decarboxylase LdcI decamer
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
7.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:LYSINE DECARBOXYLASE, INDUCIBLE
Gene (Uniprot):cadA
Chain IDs:A
Chain Length:715
Number of Molecules:1
Biological Source:ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ATPASE RAVA
Gene (Uniprot):ravA
Chain IDs:B (auth: D)
Chain Length:115
Number of Molecules:1
Biological Source:ESCHERICHIA COLI STR. K-12 SUBSTR. MG1655
Ligand Molecules
Primary Citation
Assembly Principles of a Unique Cage Formed by Hexameric and Decameric E. Coli Proteins.
Elife 3 03653 ? (2014)
PMID: 25097238 DOI: 10.7554/ELIFE.03653

Abstact

A 3.3 MDa macromolecular cage between two Escherichia coli proteins with seemingly incompatible symmetries-the hexameric AAA+ ATPase RavA and the decameric inducible lysine decarboxylase LdcI-is reconstructed by cryo-electron microscopy to 11 Å resolution. Combined with a 7.5 Å resolution reconstruction of the minimal complex between LdcI and the LdcI-binding domain of RavA, and the previously solved crystal structures of the individual components, this work enables to build a reliable pseudoatomic model of this unusual architecture and to identify conformational rearrangements and specific elements essential for complex formation. The design of the cage created via lateral interactions between five RavA rings is unique for the diverse AAA+ ATPase superfamily.

Legend

Protein

Chemical

Disease

Primary Citation of related structures