4UMK image
Deposition Date 2014-05-19
Release Date 2015-05-13
Last Version Date 2024-05-08
Entry Detail
PDB ID:
4UMK
Title:
The complex of Spo0J and parS DNA in chromosomal partition system
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PROBABLE CHROMOSOME-PARTITIONING PROTEIN PARB
Gene (Uniprot):parB
Chain IDs:A, B, C, D
Chain Length:240
Number of Molecules:4
Biological Source:HELICOBACTER PYLORI
Polymer Type:polydeoxyribonucleotide
Molecule:DNA
Chain IDs:E (auth: W), H (auth: Z)
Chain Length:24
Number of Molecules:2
Biological Source:BACILLUS SUBTILIS
Polymer Type:polydeoxyribonucleotide
Molecule:DNA
Chain IDs:F (auth: X), G (auth: Y)
Chain Length:24
Number of Molecules:2
Biological Source:BACILLUS SUBTILIS
Ligand Molecules
Primary Citation
Insights into ParB spreading from the complex structure of Spo0J and parS.
Proc. Natl. Acad. Sci. U.S.A. 112 6613 6618 (2015)
PMID: 25964325 DOI: 10.1073/pnas.1421927112

Abstact

Spo0J (stage 0 sporulation protein J, a member of the ParB superfamily) is an essential component of the ParABS (partition system of ParA, ParB, and parS)-related bacterial chromosome segregation system. ParB (partition protein B) and its regulatory protein, ParA, act cooperatively through parS (partition S) DNA to facilitate chromosome segregation. ParB binds to chromosomal DNA at specific parS sites as well as the neighboring nonspecific DNA sites. Various ParB molecules can associate together and spread along the chromosomal DNA. ParB oligomer and parS DNA interact together to form a high-order nucleoprotein that is required for the loading of the structural maintenance of chromosomes proteins onto the chromosome for chromosomal DNA condensation. In this report, we characterized the binding of parS and Spo0J from Helicobacter pylori (HpSpo0J) and solved the crystal structure of the C-terminal domain truncated protein (Ct-HpSpo0J)-parS complex. Ct-HpSpo0J folds into an elongated structure that includes a flexible N-terminal domain for protein-protein interaction and a conserved DNA-binding domain for parS binding. Two Ct-HpSpo0J molecules bind with one parS. Ct-HpSpo0J interacts vertically and horizontally with its neighbors through the N-terminal domain to form an oligomer. These adjacent and transverse interactions are accomplished via a highly conserved arginine patch: RRLR. These interactions might be needed for molecular assembly of a high-order nucleoprotein complex and for ParB spreading. A structural model for ParB spreading and chromosomal DNA condensation that lead to chromosome segregation is proposed.

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Primary Citation of related structures