4UFC image
Deposition Date 2015-03-16
Release Date 2015-07-08
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4UFC
Keywords:
Title:
Crystal structure of the GH95 enzyme BACOVA_03438
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.81 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GH95
Chain IDs:A, B
Chain Length:811
Number of Molecules:2
Biological Source:BACTEROIDES OVATUS
Primary Citation
Glycan Complexity Dictates Microbial Resource Allocation in the Large Intestine.
Nat.Commun. 6 7481 ? (2015)
PMID: 26112186 DOI: 10.1038/NCOMMS8481

Abstact

The structure of the human gut microbiota is controlled primarily through the degradation of complex dietary carbohydrates, but the extent to which carbohydrate breakdown products are shared between members of the microbiota is unclear. We show here, using xylan as a model, that sharing the breakdown products of complex carbohydrates by key members of the microbiota, such as Bacteroides ovatus, is dependent on the complexity of the target glycan. Characterization of the extensive xylan degrading apparatus expressed by B. ovatus reveals that the breakdown of the polysaccharide by the human gut microbiota is significantly more complex than previous models suggested, which were based on the deconstruction of xylans containing limited monosaccharide side chains. Our report presents a highly complex and dynamic xylan degrading apparatus that is fine-tuned to recognize the different forms of the polysaccharide presented to the human gut microbiota.

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