4UBG image
Deposition Date 2014-08-13
Release Date 2014-11-26
Last Version Date 2023-09-27
Entry Detail
PDB ID:
4UBG
Keywords:
Title:
Resting state of rat cysteine dioxygenase C93G variant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.24
R-Value Work:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cysteine dioxygenase type 1
Gene (Uniprot):Cdo1
Mutations:C93G
Chain IDs:A
Chain Length:210
Number of Molecules:1
Biological Source:Rattus norvegicus
Primary Citation
The Cys-Tyr Cross-Link of Cysteine Dioxygenase Changes the Optimal pH of the Reaction without a Structural Change.
Biochemistry 53 7961 7968 (2014)
PMID: 25390690 DOI: 10.1021/bi501277a

Abstact

Cysteine dioxygenase (CDO) is a non-heme monoiron enzyme with an unusual posttranslational modification in the proximity of the ferrous iron active site. This modification, a cysteine to tyrosine thioether bond, cross-links two β-strands of the β-barrel. We have investigated its role in catalysis through a combined crystallographic and kinetic approach. The C93G variant lacks the cross-link and shows little change in structure from that of the wild type, suggesting that the cross-link does not stabilize an otherwise unfavorable conformation. A pH-dependent kinetic study shows that both cross-linked and un-cross-linked CDO are active but the optimal pH decreases with the presence of the cross-link. This result reflects the effect of the thioether bond on the pKa of Y157 and this residue's role in catalysis. At higher pH values, kcat is also higher for the cross-linked form, extending the pH range of activity. We therefore propose that the cross-link also increases activity by controlling deleterious interactions involving the thiol/ate of C93.

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Primary Citation of related structures