4UB9 image
Deposition Date 2014-08-12
Release Date 2015-06-24
Last Version Date 2024-05-01
Entry Detail
PDB ID:
4UB9
Keywords:
Title:
Structural and catalytic characterization of molinate hydrolase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.27 Å
R-Value Free:
0.22
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Molinate hydrolase
Gene (Uniprot):molA
Chain IDs:A, B, C, D, E, F, G, H
Chain Length:496
Number of Molecules:8
Biological Source:Gulosibacter molinativorax
Ligand Molecules
Primary Citation
Structure-guided engineering of molinate hydrolase for the degradation of thiocarbamate pesticides.
Plos One 10 e0123430 e0123430 (2015)
PMID: 25905461 DOI: 10.1371/journal.pone.0123430

Abstact

Molinate is a recalcitrant thiocarbamate used to control grass weeds in rice fields. The recently described molinate hydrolase, from Gulosibacter molinativorax ON4T, plays a key role in the only known molinate degradation pathway ending in the formation of innocuous compounds. Here we report the crystal structure of recombinant molinate hydrolase at 2.27 Å. The structure reveals a homotetramer with a single mononuclear metal-dependent active site per monomer. The active site architecture shows similarities with other amidohydrolases and enables us to propose a general acid-base catalysis mechanism for molinate hydrolysis. Molinate hydrolase is unable to degrade bulkier thiocarbamate pesticides such as thiobencarb which is used mostly in rice crops. Using a structural-based approach, we were able to generate a mutant (Arg187Ala) that efficiently degrades thiobencarb. The engineered enzyme is suitable for the development of a broader thiocarbamate bioremediation system.

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Primary Citation of related structures