4UA1 image
Deposition Date 2014-08-07
Release Date 2015-07-22
Last Version Date 2024-03-20
Entry Detail
PDB ID:
4UA1
Title:
Crystal structure of dual function transcriptional regulator MerR form Bacillus megaterium MB1 in complex with mercury (II) ion
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.56 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Regulatory protein
Gene (Uniprot):merR
Chain IDs:A, B
Chain Length:132
Number of Molecules:2
Biological Source:Bacillus megaterium
Ligand Molecules
Primary Citation
Structural basis of the mercury(II)-mediated conformational switching of the dual-function transcriptional regulator MerR
Nucleic Acids Res. 43 7612 7623 (2015)
PMID: 26150423 DOI: 10.1093/nar/gkv681

Abstact

The mer operon confers bacterial resistance to inorganic mercury (Hg(2+)) and organomercurials by encoding proteins involved in sensing, transport and detoxification of these cytotoxic agents. Expression of the mer operon is under tight control by the dual-function transcriptional regulator MerR. The metal-free, apo MerR binds to the mer operator/promoter region as a repressor to block transcription initiation, but is converted into an activator upon Hg(2+)-binding. To understand how MerR interacts with Hg(2+) and how Hg(2+)-binding modulates MerR function, we report here the crystal structures of apo and Hg(2+)-bound MerR from Bacillus megaterium, corresponding respectively to the repressor and activator conformation of MerR. To our knowledge, the apo-MerR structure represents the first visualization of a MerR family member in its intact and inducer-free form. And the Hg(2+)-MerR structure offers the first view of a triligated Hg(2+)-thiolate center in a metalloprotein, confirming that MerR binds Hg(2+) via trigonal planar coordination geometry. Structural comparison revealed the conformational transition of MerR is coupled to the assembly/disassembly of a buried Hg(2+) binding site, thereby providing a structural basis for the Hg(2+)-mediated functional switching of MerR. The pronounced Hg(2+)-induced repositioning of the MerR DNA-binding domains suggests a plausible mechanism for the transcriptional regulation of the mer operon.

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Primary Citation of related structures