4U9E image
Deposition Date 2014-08-06
Release Date 2015-01-21
Last Version Date 2024-10-23
Entry Detail
PDB ID:
4U9E
Title:
Crystal structure of the Zn-directed tetramer of the engineered cyt cb562 variant, A104/57G AB3
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
F 2 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562
Gene (Uniprot):cybC
Mutagens:R34A, L38A, Q41W, K42S, E57G, K59H, D66W, V69I, D73H, K77H, A89H, T96C, R98C, A100H, Y101C, K104A,
Chain IDs:A
Chain Length:106
Number of Molecules:1
Biological Source:Escherichia coli
Primary Citation
A designed supramolecular protein assembly with in vivo enzymatic activity
Science 346 1525 ? (2014)
PMID: 25525249 DOI: 10.1126/science.1259680

Abstact

The generation of new enzymatic activities has mainly relied on repurposing the interiors of preexisting protein folds because of the challenge in designing functional, three-dimensional protein structures from first principles. Here we report an artificial metallo-β-lactamase, constructed via the self-assembly of a structurally and functionally unrelated, monomeric redox protein into a tetrameric assembly that possesses catalytic zinc sites in its interfaces. The designed metallo-β-lactamase is functional in the Escherichia coli periplasm and enables the bacteria to survive treatment with ampicillin. In vivo screening of libraries has yielded a variant that displays a catalytic proficiency [(k(cat)/K(m))/k(uncat)] for ampicillin hydrolysis of 2.3 × 10(6) and features the emergence of a highly mobile loop near the active site, a key component of natural β-lactamases to enable substrate interactions.

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Primary Citation of related structures