4U66 image
Deposition Date 2014-07-28
Release Date 2015-07-15
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4U66
Keywords:
Title:
Induced Dimer Structure of Methionine Sulfoxide Reductase U16C from Clostridium Oremlandii
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Peptide methionine sulfoxide reductase MsrA
Gene (Uniprot):msrA
Mutations:U16C
Chain IDs:A, B, C
Chain Length:209
Number of Molecules:3
Biological Source:Alkaliphilus oremlandii OhILAs
Primary Citation
Evidence for the Dimerization-Mediated Catalysis of Methionine Sulfoxide Reductase A from Clostridium oremlandii
Plos One 10 e0131523 e0131523 (2015)
PMID: 26107511 DOI: 10.1371/journal.pone.0131523

Abstact

Clostridium oremlandii MsrA (CoMsrA) is a natively selenocysteine-containing methionine-S-sulfoxide reductase and classified into a 1-Cys type MsrA. CoMsrA exists as a monomer in solution. Herein, we report evidence that CoMsrA can undergo homodimerization during catalysis. The monomeric CoMsrA dimerizes in the presence of its substrate methionine sulfoxide via an intermolecular disulfide bond between catalytic Cys16 residues. The dimeric CoMsrA is resolved by the reductant glutaredoxin, suggesting the relevance of dimerization in catalysis. The dimerization reaction occurs in a concentration- and time-dependent manner. In addition, the occurrence of homodimer formation in the native selenoprotein CoMsrA is confirmed. We also determine the crystal structure of the dimeric CoMsrA, having the dimer interface around the two catalytic Cys16 residues. A central cone-shaped hole is present in the surface model of dimeric structure, and the two Cys16 residues constitute the base of the hole. Collectively, our biochemical and structural analyses suggest a novel dimerization-mediated mechanism for CoMsrA catalysis that is additionally involved in CoMsrA regeneration by glutaredoxin.

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