4U5R image
Deposition Date 2014-07-25
Release Date 2015-02-25
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4U5R
Keywords:
Title:
Crystal structure of D106A mutant of RhCC (YP_702633.1) from Rhodococcus jostii RHA1 at 1.55 Angstrom
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.55 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:RhCC
Gene (Uniprot):RHA1_ro02670
Chain IDs:A, B, C
Chain Length:152
Number of Molecules:3
Biological Source:Rhodococcus jostii
Ligand Molecules
Primary Citation
Functional and structural characterization of an unusual cofactor-independent oxygenase.
Biochemistry 54 1219 1232 (2015)
PMID: 25565350 DOI: 10.1021/bi501200j

Abstact

The vast majority of characterized oxygenases use bound cofactors to activate molecular oxygen to carry out oxidation chemistry. Here, we show that an enzyme of unknown activity, RhCC from Rhodococcus jostii RHA1, functions as an oxygenase, using 4-hydroxyphenylenolpyruvate as a substrate. This unique and complex reaction yields 3-hydroxy-3-(4-hydroxyphenyl)-pyruvate, 4-hydroxybenzaldehyde, and oxalic acid as major products. Incubations with H2(18)O, (18)O2, and a substrate analogue suggest that this enzymatic oxygenation reaction likely involves a peroxide anion intermediate. Analysis of sequence similarity and the crystal structure of RhCC (solved at 1.78 Å resolution) reveal that this enzyme belongs to the tautomerase superfamily. Members of this superfamily typically catalyze tautomerization, dehalogenation, or decarboxylation reactions rather than oxygenation reactions. The structure shows the absence of cofactors, establishing RhCC as a rare example of a redox-metal- and coenzyme-free oxygenase. This sets the stage to study the mechanistic details of cofactor-independent oxygen activation in the unusual context of the tautomerase superfamily.

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