4U2A image
Deposition Date 2014-07-16
Release Date 2014-12-31
Last Version Date 2023-12-27
Entry Detail
PDB ID:
4U2A
Title:
Structure of a lectin from the seeds of Vatairea macrocarpa complexed with GalNAc
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.74 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Seed lectin
Chain IDs:A
Chain Length:240
Number of Molecules:1
Biological Source:Vatairea macrocarpa
Primary Citation
High-resolution structure of a new Tn antigen-binding lectin from Vatairea macrocarpa and a comparative analysis of Tn-binding legume lectins.
Int.J.Biochem.Cell Biol. 59C 103 110 (2014)
PMID: 25499445 DOI: 10.1016/j.biocel.2014.12.002

Abstact

Plant lectins have been studied as histological markers and promising antineoplastic molecules for a long time, and structural characterization of different lectins bound to specific cancer epitopes has been carried out successfully. The crystal structures of Vatairea macrocarpa (VML) seed lectin in complex with GalNAc-α-O-Ser (Tn antigen) and GalNAc have been determined at the resolution of 1.4Å and 1.7Å, respectively. Molecular docking analysis of this new structure and other Tn-binding legume lectins to O-mucin fragments differently decorated with this antigen provides a comparative binding profile among these proteins, stressing that subtle alterations that may not influence monosaccharide binding can, nonetheless, directly impact the ability of these lectins to recognize naturally occurring antigens. In addition to the specific biological effects of VML, the structural and binding similarities between it and other lectins commonly used as histological markers (e.g., VVLB4 and SBA) strongly suggest VML as a candidate tool for cancer research.

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Primary Citation of related structures