4TX5 image
Deposition Date 2014-07-02
Release Date 2015-07-15
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4TX5
Keywords:
Title:
Crystal structure of Smac-DIABLO (in space group P65)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 65
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Diablo homolog, mitochondrial
Gene (Uniprot):DIABLO
Chain IDs:A, B
Chain Length:192
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
The activator of apoptosis Smac-DIABLO acts as a tetramer in solution.
Biophys.J. 108 714 723 (2015)
PMID: 25650938 DOI: 10.1016/j.bpj.2014.11.3471

Abstact

Smac-DIABLO in its mature form (20.8 kDa) binds to baculoviral IAP repeat (BIR) domains of inhibitor of apoptosis proteins (IAPs) releasing their inhibitory effects on caspases, thus promoting cell death. Despite its apparent molecular mass (∼100 kDa), Smac-DIABLO was held to be a dimer in solution, simultaneously targeting two distinct BIR domains. We report an extensive biophysical characterization of the protein alone and in complex with the X-linked IAP (XIAP)-BIR2-BIR3 domains. Our data show that Smac-DIABLO adopts a tetrameric assembly in solution and that the tetramer is able to bind two BIR2-BIR3 pairs of domains. Our small-angle x-ray scattering-based tetrameric model of Smac-DIABLO/BIR2-BIR3 highlights some conformational freedom of the complex that may be related to optimization of IAPs binding.

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Primary Citation of related structures